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/usr/share/doc/bowtie2-examples/changelog.Debian.gz
/usr/share/doc/bowtie2-examples/changelog.gz
/usr/share/doc/bowtie2-examples/copyright
/usr/share/doc/bowtie2/examples/index/lambda_virus.1.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.2.bt2
/usr/share/doc/bowtie2/examples/index/lambda_virus.3.bt2
/usr/share/doc/bowtie2/examples/index/lambda_virus.4.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.rev.1.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.rev.2.bt2
/usr/share/doc/bowtie2/examples/reads/combined_reads.bam.gz
/usr/share/doc/bowtie2/examples/reads/conversion_utilities.sh
/usr/share/doc/bowtie2/examples/reads/longreads.fq.gz
/usr/share/doc/bowtie2/examples/reads/reads_1.fq.gz
/usr/share/doc/bowtie2/examples/reads/reads_2.fq.gz
/usr/share/doc/bowtie2/examples/reads/simulate.pl.gz
/usr/share/doc/bowtie2/examples/reference/lambda_virus.fa.gz
/usr/share/doc/bowtie2/examples/scripts/bowtie2-hbb.sh
/usr/share/doc/bowtie2/examples/scripts/convert_quals.pl
/usr/share/doc/bowtie2/examples/scripts/gen_2b_occ_lookup.pl
/usr/share/doc/bowtie2/examples/scripts/gen_occ_lookup.pl.gz
/usr/share/doc/bowtie2/examples/scripts/gen_solqual_lookup.pl
/usr/share/doc/bowtie2/examples/scripts/infer_fraglen.pl.gz
/usr/share/doc/bowtie2/examples/scripts/make_a_thaliana_tair.sh
/usr/share/doc/bowtie2/examples/scripts/make_b_taurus_UMD3.sh
/usr/share/doc/bowtie2/examples/scripts/make_c_elegans.sh
/usr/share/doc/bowtie2/examples/scripts/make_canFam2.sh
/usr/share/doc/bowtie2/examples/scripts/make_d_melanogaster.sh
/usr/share/doc/bowtie2/examples/scripts/make_e_coli.sh
/usr/share/doc/bowtie2/examples/scripts/make_h_sapiens_ncbi36.sh
/usr/share/doc/bowtie2/examples/scripts/make_h_sapiens_ncbi37.sh
/usr/share/doc/bowtie2/examples/scripts/make_hg18.sh
/usr/share/doc/bowtie2/examples/scripts/make_hg19.sh
/usr/share/doc/bowtie2/examples/scripts/make_m_musculus_ncbi37.sh
/usr/share/doc/bowtie2/examples/scripts/make_mm10.sh
/usr/share/doc/bowtie2/examples/scripts/make_mm9.sh
/usr/share/doc/bowtie2/examples/scripts/make_rn4.sh
/usr/share/doc/bowtie2/examples/scripts/make_s_cerevisiae.sh
/usr/share/doc/bowtie2/examples/scripts/sa.py
/usr/share/doc/bowtie2/examples/scripts/sim/AlignmentCheck.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/DNA.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/Mutate.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/RandDNA.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/SampleRead.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/Sim.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/Test.pm
/usr/share/doc/bowtie2/examples/scripts/sim/contrib/ForkManager.pm.gz
/usr/share/doc/bowtie2/examples/scripts/sim/run.pl
/usr/share/doc/bowtie2/examples/scripts/sim/run.sh
/usr/share/doc/bowtie2/examples/scripts/sim/unit.sh
/usr/share/doc/bowtie2/examples/scripts/test/DNA.pm
/usr/share/doc/bowtie2/examples/scripts/test/README.md
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/benchmarks.py.gz
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/data/conf/acc.json
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/data/conf/seta.bench
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/data/conf/speed.json
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/run.py.gz
/usr/share/doc/bowtie2/examples/scripts/test/benchmark/samreader.py
/usr/share/doc/bowtie2/examples/scripts/test/big_data/reads/human_reads.fa
/usr/share/doc/bowtie2/examples/scripts/test/big_data/reads/mouse_reads.fa
/usr/share/doc/bowtie2/examples/scripts/test/bt2face.py
/usr/share/doc/bowtie2/examples/scripts/test/btdata.py.gz
/usr/share/doc/bowtie2/examples/scripts/test/dataface.py
/usr/share/doc/bowtie2/examples/scripts/test/large_idx.py
/usr/share/doc/bowtie2/examples/scripts/test/regressions.py.gz
/usr/share/doc/bowtie2/examples/scripts/test/simple_tests.pl.gz
/usr/share/doc/bowtie2/examples/scripts/test/simple_tests.sh