Paket: nanook (1.33+dfsg-1)

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nanook Kaynak Paketini İndir:

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Ana Sayfa [documentation.tgac.ac.uk]

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pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

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bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: default-jre-headless

Standard Java or Java compatible Runtime (headless)
dep: hdf5-tools

Hierarchical Data Format 5 (HDF5) - Runtime tools
dep: last-align

genome-scale comparison of biological sequences
dep: libcommons-io-java

Common useful IO related classes
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-gridextra

GNU R package with extensions for the grid package
dep: r-cran-reshape

Flexibly reshape data
dep: r-cran-scales

Scale functions for visualization
dep: texlive-latex-base

TeX Live: LaTeX fundamental packages

rec: blasr

mapping single-molecule sequencing reads
rec: bwa

Burrows-Wheeler Aligner

sug: default-jre

Standard Java or Java compatible Runtime

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