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[ Kaynak: seqtools  ]

Paket: dotter (4.44.1+dfsg-6 ve diğerleri)

dotter için bağlantılar

Screenshot

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detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Etiketler: Arayüz Araç Takımı: GTK

dotter ile İlgili Diğer Paketler

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dotter indir

Tüm mevcut mimariler için indir
Mimari Sürüm Paket Boyutu Kurulu Boyut Dosyalar
amd64 4.44.1+dfsg-6+b1 598,9 kB813,0 kB [dosya listesi]
arm64 4.44.1+dfsg-6+b1 585,6 kB801,0 kB [dosya listesi]
armel 4.44.1+dfsg-6+b1 577,8 kB759,0 kB [dosya listesi]
armhf 4.44.1+dfsg-6+b1 579,4 kB699,0 kB [dosya listesi]
i386 4.44.1+dfsg-6+b1 606,6 kB851,0 kB [dosya listesi]
mips64el 4.44.1+dfsg-6+b1 598,8 kB901,0 kB [dosya listesi]
mipsel 4.44.1+dfsg-6+b1 600,3 kB872,0 kB [dosya listesi]
ppc64el 4.44.1+dfsg-6+b1 604,0 kB901,0 kB [dosya listesi]
s390x 4.44.1+dfsg-6+b1 587,7 kB829,0 kB [dosya listesi]