Paket: stringtie (2.1.4+ds-4)

stringtie için bağlantılar

Debian Kaynakları:

stringtie Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [ccb.jhu.edu]

Benzer paketler:

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

stringtie ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.7)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 4.1.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

rec: stringtie-examples

Paket mevcut değil

sug: cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

stringtie indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
armel	332,9 kB	949,0 kB	[dosya listesi]