Paket: centrifuge (1.0.3-11)

centrifuge için bağlantılar

Debian Kaynakları:

centrifuge Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [ccb.jhu.edu]

Benzer paketler:

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

centrifuge ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: hisat2

graph-based alignment of short nucleotide reads to many genomes
dep: jellyfish

count k-mers in DNA sequences
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.0) [armel, armhf, i386 değil]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

centrifuge indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	541,3 kB	1.663,0 kB	[dosya listesi]
arm64	501,1 kB	1.597,0 kB	[dosya listesi]
armel	496,7 kB	1.653,0 kB	[dosya listesi]
armhf	486,7 kB	1.269,0 kB	[dosya listesi]
i386	552,2 kB	1.813,0 kB	[dosya listesi]
mips64el	525,8 kB	1.894,0 kB	[dosya listesi]
ppc64el	564,0 kB	1.853,0 kB	[dosya listesi]