Paket: dotter (4.44.1+dfsg-7.1 och andra)

Länkar för dotter

Debianresurser:

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Externa resurser:

Hemsida [www.sanger.ac.uk]

Liknande paket:

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Märken: Interface Toolkit: GTK

Andra paket besläktade med dotter

beror

rekommenderar

föreslår

enhances

dep: libatk1.0-0t64 (>= 1.12.4) [sparc64]

ATK accessibility toolkit
dep: libc6 (>= 2.34) [ej alpha, ia64, sh4]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libcairo2 (>= 1.2.4)

Cairo 2D vector graphics library
dep: libcurl4 (>= 7.16.2) [alpha, ia64, ppc64, sparc64, x32]

easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: libcurl4t64 (>= 7.16.2) [ej alpha, ia64, ppc64, sparc64, x32]

easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: libfontconfig1 (>= 2.12.6) [sparc64]

generic font configuration library - runtime
dep: libfreetype6 (>= 2.2.1) [sparc64]

FreeType 2 font engine, shared library files
dep: libgbtools0t64 (>= 4.44.1+dfsg)

library for visualising sequence alignments
dep: libgcc-s1 (>= 3.0) [ej armel, armhf, hppa, ia64, m68k, sh4]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.3.4) [sh4]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC stödbibliotek
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC stödbibliotek
dep: libgdk-pixbuf-2.0-0 (>= 2.22.0) [sparc64]

GDK Pixbuf library
dep: libglib2.0-0t64 (>= 2.75.3)

GLib library of C routines
dep: libgtk2.0-0 (>= 2.12.0) [alpha, sparc64]

GTK graphical user interface library - old version
dep: libgtk2.0-0t64 (>= 2.12.0) [ej alpha, sparc64]

GTK graphical user interface library - old version
dep: libharfbuzz0b (>= 0.6.0) [sparc64]

OpenType text shaping engine (shared library)
dep: libjsoncpp25 (>= 1.9.5) [sparc64]

library for reading and writing JSON for C++
dep: libpango-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libpangocairo-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libpangoft2-1.0-0 (>= 1.14.0) [sparc64]

Layout and rendering of internationalized text
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime

Hämta dotter

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	4.44.1+dfsg-7.1	591,6 kbyte	840,0 kbyte	[filförteckning]
amd64	4.44.1+dfsg-7.1+b1	596,6 kbyte	805,0 kbyte	[filförteckning]
arm64	4.44.1+dfsg-7.1+b1	584,3 kbyte	837,0 kbyte	[filförteckning]
armel	4.44.1+dfsg-7.1+b1	576,7 kbyte	759,0 kbyte	[filförteckning]
armhf	4.44.1+dfsg-7.1+b1	577,8 kbyte	699,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	4.44.1+dfsg-7.1	593,3 kbyte	795,0 kbyte	[filförteckning]
i386	4.44.1+dfsg-7.1+b1	604,0 kbyte	835,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	4.44.1+dfsg-7.1	621,8 kbyte	1.052,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	4.44.1+dfsg-7.1	592,5 kbyte	810,0 kbyte	[filförteckning]
mips64el	4.44.1+dfsg-7.1+b1	597,7 kbyte	924,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	4.44.1+dfsg-7.1	602,2 kbyte	964,0 kbyte	[filförteckning]
ppc64el	4.44.1+dfsg-7.1+b1	602,2 kbyte	901,0 kbyte	[filförteckning]
riscv64	4.44.1+dfsg-7.1+b1	595,1 kbyte	757,0 kbyte	[filförteckning]
s390x	4.44.1+dfsg-7.1+b1	592,8 kbyte	825,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	4.44.1+dfsg-7.1	607,6 kbyte	836,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	4.44.1+dfsg-7.1	580,2 kbyte	1.554,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	4.44.1+dfsg-7.1	596,7 kbyte	786,0 kbyte	[filförteckning]