[ Källkod: centrifuge ]
Paket: centrifuge (1.0.4.2-1 och andra)
Länkar för centrifuge
Debianresurser:
Hämta källkodspaketet centrifuge:
Ansvariga:
Externa resurser:
- Hemsida [ccb.jhu.edu]
Liknande paket:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Andra paket besläktade med centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.34) [hppa]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.38) [ej hppa, ia64, loong64]
- dep: libc6 (>= 2.40) [loong64]
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- dep: libc6.1 (>= 2.37) [ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
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- dep: libgcc-s1 (>= 3.0) [ej hppa, ia64, riscv64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC stödbibliotek
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- dep: libstdc++6 (>= 11) [hppa]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 13.1) [ej hppa]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
Hämta centrifuge
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| amd64 | 1.0.4.2-1 | 568,7 kbyte | 1.781,0 kbyte | [filförteckning] |
| arm64 | 1.0.4.2-1 | 520,8 kbyte | 1.671,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 1.0.3-11 | 597,6 kbyte | 1.679,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 1.0.3-12 | 779,7 kbyte | 3.011,0 kbyte | [filförteckning] |
| loong64 (inofficiell anpassning) | 1.0.4.2-1 | 531,1 kbyte | 1.607,0 kbyte | [filförteckning] |
| mips64el | 1.0.4.2-1 | 539,0 kbyte | 1.903,0 kbyte | [filförteckning] |
| ppc64el | 1.0.4.2-1 | 578,0 kbyte | 1.864,0 kbyte | [filförteckning] |
| riscv64 | 1.0.4.2-1 | 589,5 kbyte | 1.415,0 kbyte | [filförteckning] |