[ Källkod: murasaki ]
Paket: murasaki-mpi (1.68.6-14 och andra)
Länkar för murasaki-mpi
Debianresurser:
Hämta källkodspaketet murasaki:
- [murasaki_1.68.6-14.dsc]
- [murasaki_1.68.6.orig-debian-tests-data.tar.gz]
- [murasaki_1.68.6.orig.tar.gz]
- [murasaki_1.68.6-14.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [murasaki.dna.bio.keio.ac.jp]
Liknande paket:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andra paket besläktade med murasaki-mpi
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
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- dep: libc6 (>= 2.38)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ej armhf, riscv64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libmpich12 [armhf, i386]
- Shared libraries for MPICH
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- dep: libopenmpi40 (>= 5.0.6) [ej armhf, i386]
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 14)
- GNU standardbibliotek v3 för C++
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)
Hämta murasaki-mpi
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| amd64 | 1.68.6-14+b1 | 676,9 kbyte | 4.527,0 kbyte | [filförteckning] |
| arm64 | 1.68.6-14+b1 | 581,3 kbyte | 4.455,0 kbyte | [filförteckning] |
| armhf | 1.68.6-14 | 502,7 kbyte | 2.429,0 kbyte | [filförteckning] |
| i386 | 1.68.6-14 | 685,4 kbyte | 4.298,0 kbyte | [filförteckning] |
| ppc64el | 1.68.6-14+b1 | 652,6 kbyte | 5.735,0 kbyte | [filförteckning] |
| riscv64 | 1.68.6-14+b1 | 629,6 kbyte | 3.299,0 kbyte | [filförteckning] |
| s390x | 1.68.6-14+b1 | 657,4 kbyte | 4.974,0 kbyte | [filförteckning] |