Package: prime-phylo (1.0.11-10 and others) [debports]
Links for prime-phylo
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External Resources:
- Homepage [prime.sbc.su.se]
Similar packages:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Other Packages Related to prime-phylo
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- dep: libblas3
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- or libblas.so.3
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- dep: libboost-mpi1.83.0 (>= 1.83.0)
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- dep: libboost-serialization1.83.0 (>= 1.83.0)
- serialization library for C++
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- dep: libc6.1 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.4)
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- or liblapack.so.3
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- dep: libopenmpi3 (>= 4.1.6)
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- dep: libstdc++6 (>= 13.2.0-9)
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- dep: libxml2 (>= 2.7.4)
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- dep: perl
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- sug: mafft
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- sug: mrbayes
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- sug: muscle
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- sug: njplot
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- sug: phyml
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- sug: probalign
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Download prime-phylo
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.0.11-10+b1 | 751.7 kB | 3,724.0 kB | [list of files] |