Package: megadepth (1.2.0-4 and others) [debports]
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computes coverage from BigWig and BAM sequencing files
A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.
This package is a successor of the program 'bamcount'.
Other Packages Related to megadepth
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- dep: libbigwig0t64 (>= 0.4.6)
- C library for handling bigWig files
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- dep: libc6.1 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC support library
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- sug: r-bioc-megadepth
- BioCOnductor BigWig and BAM related utilities
Download megadepth
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.2.0-4+b1 | 78.4 kB | 276.0 kB | [list of files] |