[ Источник: r-bioc-megadepth ]
Пакет: r-bioc-megadepth (1.12.0+ds-2)
Ссылки для r-bioc-megadepth
Ресурсы Debian:
- Сообщения об ошибках
- Developer Information
- Debian журнал изменений
- Файл авторских прав
- Отслеживание заплат Debian
Исходный код r-bioc-megadepth:
- [r-bioc-megadepth_1.12.0+ds-2.dsc]
- [r-bioc-megadepth_1.12.0+ds.orig.tar.xz]
- [r-bioc-megadepth_1.12.0+ds-2.debian.tar.xz]
Сопровождающие:
Внешние ресурсы:
- Сайт [bioconductor.org]
Подобные пакеты:
BioCOnductor BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
Другие пакеты, относящиеся к r-bioc-megadepth
|
|
|
|
-
- dep: megadepth
- computes coverage from BigWig and BAM sequencing files
-
- dep: r-api-4.0
- виртуальный пакет, предоставляемый r-base-core
-
- dep: r-api-bioc-3.18
- виртуальный пакет, предоставляемый r-bioc-biocgenerics
-
- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-cran-cmdfun
- GNI R framework for building interfaces to shell commands
-
- dep: r-cran-dplyr
- GNU R grammar of data manipulation
-
- dep: r-cran-fs
- GNU R cross-platform file system operations
-
- dep: r-cran-magrittr
- GNU R forward-pipe operator
-
- dep: r-cran-readr
- GNU R package to read rectangular text data
-
- dep: r-cran-xfun
- miscellaneous GNU R functions by 'Yihui Xie'
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-cran-covr
- test coverage for GNU R packages
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-sessioninfo
- R Session Information
-
- sug: r-cran-testthat
- GNU R testsuite
Загрузка r-bioc-megadepth
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| all | 83,0 Кб | 165,0 Кб | [список файлов] |