[ Paquet source : r-bioc-megadepth ]
Paquet : r-bioc-megadepth (1.12.0+ds-2)
Liens pour r-bioc-megadepth
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source r-bioc-megadepth :
- [r-bioc-megadepth_1.12.0+ds-2.dsc]
- [r-bioc-megadepth_1.12.0+ds.orig.tar.xz]
- [r-bioc-megadepth_1.12.0+ds-2.debian.tar.xz]
Responsables :
Ressources externes :
- Page d'accueil [bioconductor.org]
Paquets similaires :
BioCOnductor BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
Autres paquets associés à r-bioc-megadepth
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- dep: megadepth
- computes coverage from BigWig and BAM sequencing files
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- dep: r-api-4.0
- paquet virtuel fourni par r-base-core
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- dep: r-api-bioc-3.18
- paquet virtuel fourni par r-bioc-biocgenerics
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-cran-cmdfun
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- dep: r-cran-fs
- GNU R cross-platform file system operations
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- dep: r-cran-magrittr
- GNU R forward-pipe operator
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-xfun
- miscellaneous GNU R functions by 'Yihui Xie'
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-sessioninfo
- R Session Information
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- sug: r-cran-testthat
- GNU R testsuite
Télécharger r-bioc-megadepth
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| all | 83,0 ko | 165,0 ko | [liste des fichiers] |