Пакет: minia (3.2.6-3)

Ссылки для minia

Ресурсы Debian:

Исходный код minia:

Сопровождающие:

Внешние ресурсы:

Сайт [minia.genouest.org]

Подобные пакеты:

short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Другие пакеты, относящиеся к minia

зависимости

рекомендации

предложения

enhances

dep: bc

калькулятор GNU bc произвольной точности
dep: libc6 (>= 2.34)

библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
dep: libgatbcore3 (>= 1.4.2)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0)

вспомогательная библиотека GCC
dep: libhdf5-103-1

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 11)

стандартная библиотека GNU C++ версии 3
dep: zlib1g

библиотека сжатия

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

sug: bandage

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

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Архитектура	Размер пакета	В установленном виде	Файлы
amd64	393,2 Кб	740,0 Кб	[список файлов]