Pakket: maffilter (1.3.1+dfsg-6)

Verwijzigingen voor maffilter

Debian bronnen:

Het bronpakket maffilter downloaden:

Beheerders:

Externe bronnen:

Homepage [jydu.github.io]

Vergelijkbare pakketten:

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andere aan maffilter gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libboost-iostreams1.74.0 (>= 1.74.0+ds1) [x32]

Boost.Iostreams Library
dep: libboost-iostreams1.83.0 (>= 1.83.0) [niet x32]

Boost.Iostreams Library
dep: libbpp-core4t64 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3t64 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12t64 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3t64 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12t64 (>= 2.4.1)

Bio++ Sequence library
dep: libbz2-1.0 [sparc64]

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support bibliotheek
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support bibliotheek
dep: libstdc++6 (>= 13.1) [niet alpha]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14-20240221-2.1) [alpha]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4) [sparc64]

compressiebibliotheek - programma's

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

maffilter downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	240,8 kB	1.373,0 kB	[overzicht]
amd64	259,5 kB	1.308,0 kB	[overzicht]
arm64	237,9 kB	1.368,0 kB	[overzicht]
armel	222,9 kB	1.179,0 kB	[overzicht]
armhf	228,8 kB	1.039,0 kB	[overzicht]
hppa (unofficial port)	248,4 kB	1.250,0 kB	[overzicht]
i386	266,2 kB	1.271,0 kB	[overzicht]
ia64 (unofficial port)	273,0 kB	1.911,0 kB	[overzicht]
m68k (unofficial port)	248,5 kB	1.255,0 kB	[overzicht]
mips64el	225,2 kB	1.489,0 kB	[overzicht]
ppc64 (unofficial port)	256,3 kB	1.560,0 kB	[overzicht]
ppc64el	254,5 kB	1.432,0 kB	[overzicht]
riscv64	248,2 kB	1.176,0 kB	[overzicht]
s390x	247,8 kB	1.320,0 kB	[overzicht]
sh4 (unofficial port)	284,3 kB	1.304,0 kB	[overzicht]
sparc64 (unofficial port)	220,7 kB	1.503,0 kB	[overzicht]
x32 (unofficial port)	258,5 kB	1.251,0 kB	[overzicht]