Pakket: libtfbs-perl (0.7.1+ds-5 en anderen)

Verwijzigingen voor libtfbs-perl

Debian bronnen:

Het bronpakket libtfbs-perl downloaden:

Beheerders:

Externe bronnen:

Homepage [tfbs.genereg.net]

Vergelijkbare pakketten:

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

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depends

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dep: bioperl

Perl tools for computational molecular biology
dep: libc6 (>= 2.38) [niet alpha, ia64, loong64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.41) [loong64, sh4]
dep: libc6.1 (>= 2.37) [ia64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.38) [alpha]
dep: libdbi-perl

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dep: libwww-perl

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dep: pdl (>= 1:2.085-1) [ia64]

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dep: pdl (>= 1:2.100-1) [niet ia64]
dep: pdlapi-20

virtueel pakket geboden door pdl
dep: perl (>= 5.38.2-3.2) [ia64]

Larry Wall's Practical Extraction and Report Language

dep: perl (>= 5.40.1-6) [niet ia64]
dep: perlapi-5.38.2 [ia64]

virtueel pakket geboden door perl-base
dep: perlapi-5.40.1 [niet ia64]

virtueel pakket geboden door perl-base

rec: libgd-gd2-perl

virtueel pakket geboden door libgd-perl

of libgd-gd2-noxpm-perl

virtueel pakket geboden door libgd-perl

libtfbs-perl downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.7.1+ds-5	219,0 kB	1.029,0 kB	[overzicht]
amd64	0.7.1+ds-5	219,2 kB	984,0 kB	[overzicht]
arm64	0.7.1+ds-5	219,4 kB	1.028,0 kB	[overzicht]
armel	0.7.1+ds-5	219,9 kB	1.028,0 kB	[overzicht]
armhf	0.7.1+ds-5	218,1 kB	1.028,0 kB	[overzicht]
hppa (unofficial port)	0.7.1+ds-5	219,3 kB	981,0 kB	[overzicht]
i386	0.7.1+ds-5	219,2 kB	980,0 kB	[overzicht]
ia64 (unofficial port)	0.7.1+ds-3	218,4 kB	985,0 kB	[overzicht]
loong64 (unofficial port)	0.7.1+ds-5	219,3 kB	1.028,0 kB	[overzicht]
m68k (unofficial port)	0.7.1+ds-5	218,0 kB	980,0 kB	[overzicht]
mips64el	0.7.1+ds-5	218,9 kB	1.029,0 kB	[overzicht]
ppc64 (unofficial port)	0.7.1+ds-5	219,9 kB	1.028,0 kB	[overzicht]
ppc64el	0.7.1+ds-5	219,9 kB	1.028,0 kB	[overzicht]
riscv64	0.7.1+ds-5	218,8 kB	976,0 kB	[overzicht]
s390x	0.7.1+ds-5	218,9 kB	980,0 kB	[overzicht]
sh4 (unofficial port)	0.7.1+ds-5	218,9 kB	1.028,0 kB	[overzicht]
sparc64 (unofficial port)	0.7.1+ds-5	218,6 kB	1.990,0 kB	[overzicht]
x32 (unofficial port)	0.7.1+ds-5	218,7 kB	980,0 kB	[overzicht]