Pakket: murasaki-mpi (1.68.6-13 en anderen) [debports]
Verwijzigingen voor murasaki-mpi
Debian bronnen:
Het bronpakket downloaden:
Niet gevondenBeheerders:
Externe bronnen:
- Homepage [murasaki.dna.bio.keio.ac.jp]
Vergelijkbare pakketten:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andere aan murasaki-mpi gerelateerde pakketten
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
-
- dep: libc6.1 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC support bibliotheek
-
- dep: libopenmpi3t64 (>= 4.1.6)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)