Paket: murasaki-mpi (1.68.6-13 und andere) [debports]
Links für murasaki-mpi
Debian-Ressourcen:
Quellcode-Paket herunterladen:
Nicht gefundenBetreuer:
Externe Ressourcen:
- Homepage [murasaki.dna.bio.keio.ac.jp]
Ähnliche Pakete:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andere Pakete mit Bezug zu murasaki-mpi
|
|
|
|
-
- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++
-
- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams-Bibliothek
-
- dep: libc6.1 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb
-
- dep: libgcc-s1 (>= 3.4)
- GCC Support-Bibliothek
-
- dep: libopenmpi3t64 (>= 4.1.6)
- Leistungsstarke Message-Passing-Bibliothek - Laufzeitbibliotheken
-
- dep: libstdc++6 (>= 13.1)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
-
- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)
murasaki-mpi herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| alpha (inoffizielle Portierung) | 1.68.6-13+b5 | 694,7 kB | 5.701,0 kB | [Liste der Dateien] |