[ Bron: sga ]
Pakket: sga (0.10.15-7 en anderen)
Verwijzigingen voor sga
Debian bronnen:
Het bronpakket sga downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Michael R. Crusoe (QA-pagina)
- Andreas Tille (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Andere aan sga gerelateerde pakketten
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.34) [amd64, arm64]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.38) [niet amd64, arm64]
-
- dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64el]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
- dep: libgcc-s1 (>= 7) [i386]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 11) [amd64, arm64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [niet amd64, arm64]
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4) [niet armhf]
- compressiebibliotheek - programma's
- dep: zlib1g (>= 1:1.2.3.3) [armhf]
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- rec: abyss
- de novo, parallel, sequence assembler for short reads
sga downloaden
| Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|---|
| amd64 | 0.10.15-7+b1 | 812,5 kB | 2.432,0 kB | [overzicht] |
| arm64 | 0.10.15-7+b1 | 580,5 kB | 1.792,0 kB | [overzicht] |
| armhf | 0.10.15-7+b2 | 608,1 kB | 1.342,0 kB | [overzicht] |
| i386 | 0.10.15-7+b2 | 939,3 kB | 2.758,0 kB | [overzicht] |
| ppc64el | 0.10.15-7+b2 | 711,9 kB | 2.303,0 kB | [overzicht] |
| riscv64 | 0.10.15-7+b2 | 675,7 kB | 1.491,0 kB | [overzicht] |