Package: khmer (3.0.0~a3+dfsg-9~0exp and others)

Links for khmer

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External Resources:

Homepage [khmer.readthedocs.org]

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Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Other Packages Related to khmer

depends

recommends

suggests

enhances

dep: khmer-common

common files for the khmer project tools
dep: libbz2-1.0

고성능 블럭 소팅 파일 압축 라이브러리 - 런타임
dep: libc6 (>= 2.38)

GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.4)

GCC 기능 지원 라이브러리
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) 지원 라이브러리
dep: libstdc++6 (>= 13.1)

GNU 표준 C++ 라이브러리 v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.13)

dep: python3 (>= 3.12~)
dep: python3-screed

short nucleotide read sequence utils in Python 3
dep: zlib1g (>= 1:1.2.3.4)

압축 라이브러리 - 런타임

Download khmer

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Architecture	Version	Package Size	Installed Size	Files
amd64	3.0.0~a3+dfsg-9~0exp+b1	7,061.4 kB	40,948.0 kB	[list of files]