パッケージ: r-bioc-isoformswitchanalyzer (2.6.0+ds-2 など)

r-bioc-isoformswitchanalyzer に関するリンク

Debian の資源:

r-bioc-isoformswitchanalyzer ソースパッケージをダウンロード:

メンテナ:

外部の資源:

ホームページ [bioconductor.org]

類似のパッケージ:

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

その他の r-bioc-isoformswitchanalyzer 関連パッケージ

依存

推奨

提案

enhances

dep: r-api-4.0

以下のパッケージによって提供される仮想パッケージです: r-base-core
dep: r-api-bioc-3.16 [x32]

パッケージは利用できません
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

パッケージは利用できません
dep: r-api-bioc-3.20 [hppa, ia64, sh4, x32 以外]

以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocparallel [x32 以外]

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.50.0)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq
dep: r-bioc-drimseq [x32]

Differential transcript usage and tuQTL analyses with
dep: r-bioc-edger

Empirical analysis of digital gene expression data in R
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-pfamanalyzer [x32 以外]

GNU R identification of domain isotypes in pfam data
dep: r-bioc-pwalign [hppa, ia64, sh4, x32 以外]

Perform pairwise sequence alignments
dep: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors [x32 以外]

BioConductor S4 implementation of vectors and lists
dep: r-bioc-saturn (>= 1.7.0) [x32 以外]

scalable analysis of differential transcript usage for RNA-sequencing
dep: r-bioc-summarizedexperiment [x32 以外]

BioConductor assay container
dep: r-bioc-sva [x32 以外]

GNU R Surrogate Variable Analysis
dep: r-bioc-tximeta (>= 1.7.12)

Transcript Quantification Import with Automatic Metadata
dep: r-bioc-tximport (>= 1.7.1)

transcript-level estimates for biological sequencing
dep: r-bioc-xvector

BioConductor representation and manpulation of external sequences
dep: r-cran-dbi

GNU R package providing a generic database interface
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-futile.logger

logging utility for GNU R
dep: r-cran-ggplot2 [x32]

implementation of the Grammar of Graphics

dep: r-cran-ggplot2 (>= 3.3.5) [x32 以外]
dep: r-cran-gridextra

GNU R package with extensions for the grid package
dep: r-cran-magrittr

GNU R forward-pipe operator
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes
dep: r-cran-rcurl

GNU R General network (HTTP/FTP/...) client interface
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-reshape2

Flexibly reshape data: a reboot of the reshape package
dep: r-cran-stringr

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr [x32 以外]

GNU R package to easily tidy data
dep: r-cran-venndiagram

Generate High-Resolution Venn and Euler Plots

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats

r-bioc-isoformswitchanalyzer のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード
アーキテクチャ	バージョン	パッケージサイズ	インストールサイズ	ファイル
alpha (非公式の移植版)	2.6.0+ds-2	4,018.0 kB	4,769.0 kB	[ファイル一覧]
amd64	2.6.0+ds-2	4,018.8 kB	4,718.0 kB	[ファイル一覧]
arm64	2.6.0+ds-2	4,018.9 kB	4,770.0 kB	[ファイル一覧]
hppa (非公式の移植版)	2.2.0+ds-1	4,010.0 kB	4,701.0 kB	[ファイル一覧]
ia64 (非公式の移植版)	2.2.0+ds-1	4,010.7 kB	4,701.0 kB	[ファイル一覧]
loong64 (非公式の移植版)	2.6.0+ds-2	4,018.8 kB	4,769.0 kB	[ファイル一覧]
mips64el	2.6.0+ds-2	4,019.0 kB	4,770.0 kB	[ファイル一覧]
ppc64 (非公式の移植版)	2.6.0+ds-2	4,019.1 kB	4,770.0 kB	[ファイル一覧]
ppc64el	2.6.0+ds-2	4,019.0 kB	4,770.0 kB	[ファイル一覧]
riscv64	2.6.0+ds-2	4,018.7 kB	4,710.0 kB	[ファイル一覧]
s390x	2.6.0+ds-2	4,018.9 kB	4,710.0 kB	[ファイル一覧]
sh4 (非公式の移植版)	2.2.0+ds-1	4,009.9 kB	4,761.0 kB	[ファイル一覧]
x32 (非公式の移植版)	1.20.0+ds-1	3,589.3 kB	4,202.0 kB	[ファイル一覧]