[ ソース: srst2 ]
パッケージ: srst2 (0.2.0-9)
Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
その他の srst2 関連パッケージ
|
|
|
|
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: python3-rpy2
- Python3 interface to the GNU R language and environment (version 2)