Paketti: fasta3 (36.3.8h.2020-02-11-3 ja muut)

Links for fasta3

Debian-palvelut:

Imuroi lähdekoodipaketti fasta3:

Ylläpitäjät:

External Resources:

Kotisivu [fasta.bioch.virginia.edu]

Samankaltaisia paketteja:

tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

Muut pakettiin fasta3 liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

sug: bedtools

suite of utilities for comparing genomic features
sug: libdbd-mysql-perl

Perl5 database interface to the MariaDB/MySQL database
sug: libdbi-perl

Perl Database Interface (DBI)
sug: libhtml-tableextract-perl

module for extracting the content contained in HTML tables
sug: libjson-perl

module for manipulating JSON-formatted data
sug: liburi-encode-perl

Perl module to encode and decode strings to URIs
sug: libwww-perl

simple and consistent interface to the world-wide web
sug: libxml-twig-perl

Perl module for processing huge XML documents in tree mode
sug: ncbi-blast+

next generation suite of BLAST sequence search tools
sug: perl

Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
sug: python3-mysqldb

Python interface to MySQL

Imuroi fasta3

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	36.3.8h.2020-02-11-3+b2	733.1 kt	5,988.0 kt	[tiedostoluettelo]
arm64	36.3.8h.2020-02-11-3+b2	680.1 kt	5,505.0 kt	[tiedostoluettelo]
armel	36.3.8h.2020-02-11-3+b2	670.4 kt	5,709.0 kt	[tiedostoluettelo]
armhf	36.3.8h.2020-02-11-3+b2	635.8 kt	4,417.0 kt	[tiedostoluettelo]
i386	36.3.8h.2020-02-11-3+b2	711.5 kt	6,338.0 kt	[tiedostoluettelo]
mips64el	36.3.8h.2020-02-11-3+b2	648.3 kt	6,098.0 kt	[tiedostoluettelo]
mipsel	36.3.8h.2020-02-11-3+b2	642.8 kt	5,930.0 kt	[tiedostoluettelo]
ppc64el	36.3.8h.2020-02-11-3+b2	729.2 kt	7,390.0 kt	[tiedostoluettelo]
s390x	36.3.8h.2020-02-11-3+b2	701.9 kt	6,260.0 kt	[tiedostoluettelo]