Package: pizzly (0.37.3+ds-9) [debports]

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Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

depends

recommends

suggests

enhances

dep: kallisto

near-optimal RNA-Seq quantification
dep: libc6.1 (>= 2.36)

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libgcc-s1 (>= 4.2)

GCC support library
dep: libstdc++6 (>= 12.2.0-12)

GNU Standard C++ Library v3
dep: libunwind8

library to determine the call-chain of a program - runtime
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: python3-h5py

general-purpose Python interface to hdf5

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Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	342.3 kB	1,558.0 kB	[list of files]