[ Quellcode: parsnp ]
Paket: parsnp (2.1.3+dfsg-1)
Links für parsnp
Debian-Ressourcen:
Quellcode-Paket parsnp herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Étienne Mollier (QS-Seite)
Externe Ressourcen:
- Homepage [harvest.readthedocs.org]
Ähnliche Pakete:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Andere Pakete mit Bezug zu parsnp
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
-
- dep: libc6 (>= 2.38)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [nicht armhf, riscv64]
- GCC Support-Bibliothek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- Unterstützungsbibliothek für GCC OpenMP (GOMP)
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 14)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
-
- dep: mummer
- Effizientes Sequenzalignment vollständiger Genome
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- dep: phipack
- PHI test and other tests of recombination
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python-3-Bibliothek für die Bioinformatik
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- dep: python3-numpy
- Python library for numerical computations (Python 3)
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- dep: python3-pyspoa
- Python bindings to spoa
-
- dep: python3-tqdm
- fast, extensible progress bar for Python 3 and CLI tool
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- dep: raxml
- Randomized Axelerated Maximum Likelihood von phylogenetischen Bäumen
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- dep: time
- GNU-Programm »time« zur Messung des CPU-Ressourcenverbrauchs
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
parsnp herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 209,3 kB | 1.959,0 kB | [Liste der Dateien] |
| arm64 | 196,0 kB | 1.947,0 kB | [Liste der Dateien] |
| armhf | 187,1 kB | 1.882,0 kB | [Liste der Dateien] |
| i386 | 205,7 kB | 1.950,0 kB | [Liste der Dateien] |
| ppc64el | 216,2 kB | 2.011,0 kB | [Liste der Dateien] |
| riscv64 | 214,3 kB | 1.871,0 kB | [Liste der Dateien] |
| s390x | 188,2 kB | 1.951,0 kB | [Liste der Dateien] |