[ Source: skewer ]
Package: skewer (0.2.2-2)
Links for skewer
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Download Source Package skewer:
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External Resources:
- Homepage [github.com]
Similar packages:
post-processing of high-throughput DNA sequence reads
skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.
Features
* Detection and removal of adapter sequences * Insertion and deletion allowed in pattern matching * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads * Demultiplexing of barcoded sequencing runs * Multi-threading support * Trimming based on phred quality scores * IUPAC characters for barcodes and adapters * Compressed input and output support
Other Packages Related to skewer
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- dep: libc6 (>= 2.17)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Download skewer
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 68.2 kB | 198.0 kB | [list of files] |
| arm64 | 59.4 kB | 166.0 kB | [list of files] |
| armel | 58.8 kB | 174.0 kB | [list of files] |
| armhf | 60.4 kB | 130.0 kB | [list of files] |
| i386 | 71.0 kB | 214.0 kB | [list of files] |
| mips64el | 63.4 kB | 212.0 kB | [list of files] |
| mipsel | 65.1 kB | 206.0 kB | [list of files] |
| ppc64el | 65.9 kB | 211.0 kB | [list of files] |
| s390x | 60.9 kB | 194.0 kB | [list of files] |