Пакет: salmon (1.10.2+ds1-1 и други)

Връзки за salmon

Ресурси за Debian:

Изтегляне на пакет-източник salmon.

Отговорници:

Външни препратки:

Начална страница [github.com]

Подобни пакети:

wicked-fast transcript quantification from RNA-seq data

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.

Други пакети, свързани с salmon

зависимости

препоръчани

предложени

enhances

dep: libboost-filesystem1.83.0 (>= 1.83.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.4) [amd64]

GCC support library

dep: libgcc-s1 (>= 4.5) [arm64]
dep: libjemalloc2 (>= 5.0.0)

general-purpose scalable concurrent malloc(3) implementation
dep: libjs-sphinxdoc (>= 7.2.2)

JavaScript support for Sphinx documentation
dep: libstaden-read14t64 (>= 1.14.12)

Staden library for reading and writing DNA sequencing results
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libtbb12 (>= 2021.11.0) [arm64]

parallelism library for C++ - runtime files

dep: libtbb12 (>= 2021.4.0) [amd64]
dep: libtbbmalloc2 (>= 2017~U7) [amd64]

parallelism helper library for C++ - runtime files

dep: libtbbmalloc2 (>= 2021.11.0) [arm64]
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Изтегляне на salmon

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	1.10.2+ds1-1+b2	3 191,4 кБ	12 226,0 кБ	[списък на файловете]
arm64	1.10.2+ds1-1+b2	2 983,5 кБ	10 914,0 кБ	[списък на файловете]