Пакет: python3-dna-jellyfish (2.3.0-10)

Връзки за python3-dna-jellyfish

Ресурси за Debian:

Изтегляне на пакет-източник jellyfish.

Отговорници:

Външни препратки:

Начална страница [www.cbcb.umd.edu]

Подобни пакети:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Други пакети, свързани с python3-dna-jellyfish

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb

dep: libc6 (>= 2.17) [arm64]

dep: libc6 (>= 2.4) [armhf, i386]
dep: libgcc-s1 (>= 3.0) [amd64, arm64]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libjellyfish-2.0-2 (>= 2.3.0)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 5.2) [armhf]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 9) [не armhf]
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10)

dep: python3 (>= 3.9~)

Изтегляне на python3-dna-jellyfish

Изтегляне за всички налични архитектури
Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	53,6 кБ	173,0 кБ	[списък на файловете]
arm64	50,6 кБ	169,0 кБ	[списък на файловете]
armhf	53,4 кБ	138,0 кБ	[списък на файловете]
i386	60,7 кБ	178,0 кБ	[списък на файловете]