Пакет: r-bioc-shortread (1.48.0-2)

Връзки за r-bioc-shortread

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Начална страница [bioconductor.org]

Подобни пакети:

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Други пакети, свързани с r-bioc-shortread

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.7)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: r-api-4.0

виртуален пакет, предлаган от r-base-core
dep: r-api-bioc-3.12

виртуален пакет, предлаган от r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.23.3)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.15.6)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicranges (>= 1.31.8)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rhtslib

HTSlib high-throughput sequencing library as GNU R package
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.17.25)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector

BioConductor representation and manpulation of external sequences
dep: r-bioc-zlibbioc

(Virtual) zlibbioc Bioconductor package
dep: r-cran-hwriter

HTML Writer - Outputs R objects in HTML format
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-latticeextra

GNU R package of additional graphical displays based on lattice
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
armel	5 004,1 кБ	7 433,0 кБ	[списък на файловете]