Пакет: r-bioc-tfbstools (1.36.0+dfsg-2)

Връзки за r-bioc-tfbstools

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Изтегляне на пакет-източник r-bioc-tfbstools.

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Външни препратки:

Начална страница [bioconductor.org]

Подобни пакети:

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Други пакети, свързани с r-bioc-tfbstools

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.4)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: r-api-4.0

виртуален пакет, предлаган от r-base-core
dep: r-api-bioc-3.16

виртуален пакет, предлаган от r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase (>= 2.28)

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.14.0)

generic functions for Bioconductor
dep: r-bioc-biocparallel (>= 1.2.21)

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.36.4)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome (>= 1.36.3)

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-cner (>= 1.4.0)

CNE Detection and Visualization
dep: r-bioc-dirichletmultinomial (>= 1.10.0)

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
dep: r-bioc-genomeinfodb (>= 1.6.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.20.6)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.2.7)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rtracklayer (>= 1.28.10)

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.9.25)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-seqlogo (>= 1.34.0)

GNU R sequence logos for DNA sequence alignments
dep: r-bioc-xvector (>= 0.8.0)

BioConductor representation and manpulation of external sequences
dep: r-cran-catools (>= 1.17.1)

GNU R package providing various utility functions
dep: r-cran-dbi (>= 0.6)

GNU R package providing a generic database interface
dep: r-cran-gtools (>= 3.5.0)

GNU R package with R programming tools by Greg Warnes et al
dep: r-cran-rsqlite (>= 1.0.0)

Database Interface R driver for SQLite
dep: r-cran-tfmpvalue (>= 0.0.5)

GNU R P-Value Computation for Position Weight Matrices
dep: r-cran-xml (>= 3.98-1.3)

GNU R package for XML parsing and generation

sug: r-bioc-biocstyle (>= 1.7.7)

standard styles for vignettes and other Bioconductor documents
sug: r-cran-knitr (>= 1.11)

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
armhf	987,4 кБ	1 904,0 кБ	[списък на файловете]