Пакет: nanopolish (0.14.0-1)

Връзки за nanopolish

Ресурси за Debian:

Изтегляне на пакет-източник nanopolish.

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Външни препратки:

Начална страница [github.com]

Подобни пакети:

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Други пакети, свързани с nanopolish

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhdf5-103-1

HDF5 C runtime files - serial version
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libslow5-0 (>= 0.5.1+dfsg)

library for reading & writing SLOW5 files
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: libstreamvbyte0 (>= 0.4.1)

fast integer compression in C using the StreamVByte codec
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: python3-biopython

Python3 library for bioinformatics
rec: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)

sug: make

utility for directing compilation
sug: perl

Larry Wall's Practical Extraction and Report Language

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	2 150,9 кБ	9 355,0 кБ	[списък на файловете]