套件：mafft（7.505-1） [debports]
Multiple alignment program for amino acid or nucleotide sequences
MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:
* L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences),and five speed-oriented methods:
* FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm).
其他與 mafft 有關的套件
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- dep: libc6.1 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- rec: blast2
- 套件暫時不可用
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- rec: libwww-perl
- simple and consistent interface to the world-wide web
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- rec: lynx
- classic non-graphical (text-mode) web browser
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- rec: ruby
- Interpreter of object-oriented scripting language Ruby (default version)
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- enh: t-coffee
- Multiple Sequence Alignment