略過導航欄

Packages

• About Debian
• Getting Debian
• Support
• Developers' Corner

/usr/share/doc-base/libbiojava6-java-doc.biojava6
/usr/share/doc/libbiojava6-java-doc/changelog.Debian.gz
/usr/share/doc/libbiojava6-java-doc/changelog.gz
/usr/share/doc/libbiojava6-java-doc/copyright
/usr/share/doc/libbiojava6-java/apidocs/allclasses-index.html
/usr/share/doc/libbiojava6-java/apidocs/allpackages-index.html
/usr/share/doc/libbiojava6-java/apidocs/constant-values.html
/usr/share/doc/libbiojava6-java/apidocs/demo/AFPFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/AlignmentGuiDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/BioJavaAADemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/ChemCompDistribution.html
/usr/share/doc/libbiojava6-java/apidocs/demo/CookBook.html
/usr/share/doc/libbiojava6-java/apidocs/demo/CookbookMSA.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoAlignProteins.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoAlignmentFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoAsa.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoAtomCache.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoBerkeleyScop.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoBioAssemblies.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoCATH.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoCE.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoCeSymm.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoChangeChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoCommandLineStartup.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoContacts.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoCrystalInterfaces.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoDistanceTree.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoDomainsplit.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoFATCAT.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoLoadSecStruc.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoLoadStructure.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoLoadSubstMax.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoMMCIFReader.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoMmcifToPdbConverter.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoMmtfReader.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoMmtfWriter.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoMultipleMC.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoNWALignment.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoQsAlign.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoQuatSymmetryJmol.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoRotationAxis.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoSCOP.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoSW3DAligner.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoSecStrucCalc.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoShowBiolAssembly.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoShowCATHDomain.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoShowLargeAssembly.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoSixFrameTranslation.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoStructureFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/DemoSymmetry.html
/usr/share/doc/libbiojava6-java/apidocs/demo/HmmerDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/NCBIQBlastServiceDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/ParseFastaFileDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/ParseGO.html
/usr/share/doc/libbiojava6-java/apidocs/demo/PredictDisorder.html
/usr/share/doc/libbiojava6-java/apidocs/demo/ShowStructureInJmol.html
/usr/share/doc/libbiojava6-java/apidocs/demo/TestDNANeedlemanWunsch.html
/usr/share/doc/libbiojava6-java/apidocs/demo/UncompressFile.html
/usr/share/doc/libbiojava6-java/apidocs/demo/WebStartClientDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/AFPFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/AlignmentGuiDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/BioJavaAADemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/ChemCompDistribution.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/CookBook.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/CookbookMSA.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoAlignProteins.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoAlignmentFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoAsa.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoAtomCache.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoBerkeleyScop.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoBioAssemblies.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoCATH.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoCE.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoCeSymm.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoChangeChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoCommandLineStartup.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoContacts.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoCrystalInterfaces.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoDistanceTree.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoDomainsplit.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoFATCAT.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoLoadSecStruc.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoLoadStructure.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoLoadSubstMax.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoMMCIFReader.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoMmcifToPdbConverter.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoMmtfReader.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoMmtfWriter.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoMultipleMC.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoNWALignment.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoQsAlign.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoQuatSymmetryJmol.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoRotationAxis.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoSCOP.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoSW3DAligner.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoSecStrucCalc.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoShowBiolAssembly.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoShowCATHDomain.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoShowLargeAssembly.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoSixFrameTranslation.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoStructureFromFasta.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/DemoSymmetry.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/HmmerDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/NCBIQBlastServiceDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/ParseFastaFileDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/ParseGO.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/PredictDisorder.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/ShowStructureInJmol.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/TestDNANeedlemanWunsch.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/UncompressFile.html
/usr/share/doc/libbiojava6-java/apidocs/demo/class-use/WebStartClientDemo.html
/usr/share/doc/libbiojava6-java/apidocs/demo/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/demo/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/demo/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/deprecated-list.html
/usr/share/doc/libbiojava6-java/apidocs/element-list.gz
/usr/share/doc/libbiojava6-java/apidocs/help-doc.html
/usr/share/doc/libbiojava6-java/apidocs/index-all.html
/usr/share/doc/libbiojava6-java/apidocs/index.html
/usr/share/doc/libbiojava6-java/apidocs/jquery-ui.overrides.css
/usr/share/doc/libbiojava6-java/apidocs/legal/ASSEMBLY_EXCEPTION
/usr/share/doc/libbiojava6-java/apidocs/legal/jquery.md
/usr/share/doc/libbiojava6-java/apidocs/legal/jqueryUI.md
/usr/share/doc/libbiojava6-java/apidocs/member-search-index.js
/usr/share/doc/libbiojava6-java/apidocs/module-search-index.js
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/AminoAcidProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/CommandPrompt.PropertyName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/CommandPrompt.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/Constraints.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/IPeptideProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/PeptideProperties.SingleLetterAACode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/PeptideProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/Utils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/AminoAcidProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/CommandPrompt.PropertyName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/CommandPrompt.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/Constraints.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/IPeptideProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/PeptideProperties.SingleLetterAACode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/PeptideProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/PeptidePropertiesImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/class-use/Utils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.ATTRIBUTE.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.DISTRIBUTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.GROUPING.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.TRANSITION.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/ProfeatProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/ProfeatPropertiesImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/IProfeatProperties.ATTRIBUTE.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/IProfeatProperties.DISTRIBUTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/IProfeatProperties.GROUPING.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/IProfeatProperties.TRANSITION.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/IProfeatProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/ProfeatProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/class-use/ProfeatPropertiesImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Charge.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Hydrophobicity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2NormalizedVanDerWaalsVolume.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarizability.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2SecondaryStructure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convert2SolventAccessibility.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/Convertor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2Charge.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2Hydrophobicity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2NormalizedVanDerWaalsVolume.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2Polarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2Polarizability.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2SecondaryStructure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convert2SolventAccessibility.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/class-use/Convertor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/convertor/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/profeat/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/AminoAcidComposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/CaseFreeAminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/Element.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/ElementTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/Isotope.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/ModifiedAminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/Name2Count.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/SchemaGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/AminoAcidComposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/AminoAcidCompositionTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/CaseFreeAminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/Element.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/ElementTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/Isotope.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/ModifiedAminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/MyValidationEventHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/Name2Count.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/class-use/SchemaGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/aaproperties/xml/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.PairInProfileScorerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.PairwiseSequenceAlignerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.PairwiseSequenceScorerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.ProfileProfileAlignerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.RefinerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/Alignments.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/FractionalIdentityInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/FractionalIdentityScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/FractionalSimilarityInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/FractionalSimilarityScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/GuideTree.Node.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/GuideTree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/NeedlemanWunsch.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/SimpleGapPenalty.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/SimpleProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/SmithWaterman.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/StandardRescoreRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/SubstitutionMatrixScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.PairInProfileScorerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.PairwiseSequenceAlignerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.PairwiseSequenceScorerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.ProfileProfileAlignerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.RefinerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/Alignments.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/FractionalIdentityInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/FractionalIdentityScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/FractionalSimilarityInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/FractionalSimilarityScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/GuideTree.Node.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/GuideTree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/NeedlemanWunsch.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/SimpleGapPenalty.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/SimpleProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/SmithWaterman.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/StandardRescoreRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/class-use/SubstitutionMatrixScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/StockholmFileAnnotation.StockholmFileAnnotationReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/StockholmFileAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/StockholmFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/StockholmStructure.DatabaseReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/StockholmStructure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/class-use/StockholmFileAnnotation.StockholmFileAnnotationReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/class-use/StockholmFileAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/class-use/StockholmFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/class-use/StockholmStructure.DatabaseReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/class-use/StockholmStructure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.Anchor.QueryIndexComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.Anchor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.Cut.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.Last.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.Subproblem.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AlignerHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/AnchoredPairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/GuanUberbacher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.Anchor.QueryIndexComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.Anchor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.Cut.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.Last.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.Subproblem.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AlignerHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/AnchoredPairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/class-use/GuanUberbacher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/routines/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/AbstractMatrixAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/AbstractPairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/AbstractProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/AbstractScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/Aligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/CallablePairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/CallablePairwiseSequenceScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/CallableProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/GapPenalty.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/GapPenalty.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/GuideTreeNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/HierarchicalClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/MatrixAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/PairInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/PairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/PairwiseSequenceScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/PartitionRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/ProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/ProfileProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/RescoreRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/Scorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/AbstractMatrixAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/AbstractPairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/AbstractProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/AbstractScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/Aligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/CallablePairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/CallablePairwiseSequenceScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/CallableProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/GapPenalty.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/GapPenalty.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/GuideTreeNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/HierarchicalClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/MatrixAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/PairInProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/PairwiseSequenceAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/PairwiseSequenceScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/PartitionRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/ProfileProfileAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/ProfileProfileScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/RescoreRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/class-use/Scorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/alignment/template/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/SimpleAlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/SimpleProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/SimpleProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/SimpleSequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/class-use/SimpleAlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/class-use/SimpleProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/class-use/SimpleProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/class-use/SimpleSequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/AAIndexFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/AAIndexProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/AAindexFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/DefaultAAIndexProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/ScaledSubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/SimpleSubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/SubstitutionMatrixHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/AAIndexFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/AAIndexProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/AAindexFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/DefaultAAIndexProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/ScaledSubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/SimpleSubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/class-use/SubstitutionMatrixHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/matrices/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/AlignedSequence.Step.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/AlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/MutableAlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/MutableProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/MutableProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/MutableSequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/Profile.StringFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/Profile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/ProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/ProfileView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/SequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/SubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/AlignedSequence.Step.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/AlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/MutableAlignedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/MutableProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/MutableProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/MutableSequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/Profile.StringFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/Profile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/ProfilePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/ProfileView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/SequencePair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/class-use/SubstitutionMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/alignment/template/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/CompoundNotFoundException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/Messages.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/ParserException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/TranslationException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/class-use/CompoundNotFoundException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/class-use/Messages.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/class-use/ParserException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/class-use/TranslationException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/exceptions/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/Hit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/Hsp.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/Result.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/ResultFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/SearchIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastHitBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastHspBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastResultBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastTabularParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/BlastXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastHitBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastHspBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastResultBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastTabularParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/class-use/BlastXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/blast/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/class-use/Hit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/class-use/Hsp.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/class-use/Result.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/class-use/ResultFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/class-use/SearchIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/search/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/AccessionID.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/BasicSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/CDSComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/CDSSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/ChromosomeSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/DNASequence.DNAType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/DNASequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/DataSource.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/ExonComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/ExonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/GeneSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/IntronSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/MultipleSequenceAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/ProteinSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/RNASequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/SequenceComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/SequenceOptimizationHints.SequenceCollection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/SequenceOptimizationHints.SequenceUsage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/SequenceOptimizationHints.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/StartCodonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/StopCodonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/Strand.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/TaxonomyID.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/TranscriptSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/AccessionID.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/BasicSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/CDSComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/CDSSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/ChromosomeSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/DNASequence.DNAType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/DNASequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/DataSource.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/ExonComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/ExonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/GeneSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/IntronSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/MultipleSequenceAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/ProteinSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/RNASequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/SequenceComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/SequenceOptimizationHints.SequenceCollection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/SequenceOptimizationHints.SequenceUsage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/SequenceOptimizationHints.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/StartCodonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/StopCodonSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/Strand.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/TaxonomyID.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/class-use/TranscriptSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/ABITracerCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/AmbiguityDNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/AmbiguityDNARNAHybridCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/AmbiguityRNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/AminoAcidCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/AminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/CodonCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/DNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/NucleotideCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/RNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/ABITracerCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/AmbiguityDNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/AmbiguityDNARNAHybridCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/AmbiguityRNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/AminoAcidCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/AminoAcidCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/CodonCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/DNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/NucleotideCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/class-use/RNACompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/compound/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/Edit.AbstractEdit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/Edit.Delete.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/Edit.Insert.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/Edit.Substitute.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/Edit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/class-use/Edit.AbstractEdit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/class-use/Edit.Delete.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/class-use/Edit.Insert.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/class-use/Edit.Substitute.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/class-use/Edit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/edits/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/AbstractFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/DBReferenceInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/DatabaseReferenceInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/FeatureDbReferenceInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/FeatureInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/FeatureRetriever.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/FeaturesKeyWordInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/Qualifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/QualityFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/QuantityFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/TextFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/AbstractFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/DBReferenceInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/DatabaseReferenceInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/FeatureDbReferenceInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/FeatureInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/FeatureRetriever.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/FeaturesKeyWordInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/Qualifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/QualityFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/QuantityFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/class-use/TextFeature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/features/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/ABITrace.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/BufferedReaderBytesRead.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/CasePreservingProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/DNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaGeneWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaReaderHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaSequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FastaWriterHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FileProxyDNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FileProxyProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/FileProxyRNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenbankReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenbankReaderHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenbankSequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenbankWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenbankWriterHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenericFastaHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenericFastaHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenericGenbankHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenericGenbankHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/GenericInsdcHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/IUPACParser.IUPACTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/IUPACParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/PlainFastaHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/ProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/RNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/ABITrace.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/BufferedReaderBytesRead.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/CasePreservingProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/DNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaGeneWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaReaderHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaSequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FastaWriterHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FileProxyDNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FileProxyProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/FileProxyRNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenbankReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenbankReaderHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenbankSequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenbankWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenbankWriterHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenericFastaHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenericFastaHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenericGenbankHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenericGenbankHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/GenericInsdcHeaderFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/IUPACParser.IUPACTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/IUPACParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/PlainFastaHeaderParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/ProteinSequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/class-use/RNASequenceCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/EmblId.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/EmblReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/EmblRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/EmblReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/class-use/EmblId.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/class-use/EmblReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/class-use/EmblRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/class-use/EmblReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/embl/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/FastaHeaderFormatInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/GenbankHeaderFormatInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/SequenceCreatorInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/SequenceHeaderParserInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/SequenceParserInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/class-use/FastaHeaderFormatInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/class-use/GenbankHeaderFormatInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/class-use/SequenceCreatorInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/class-use/SequenceHeaderParserInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/class-use/SequenceParserInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/template/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/ClasspathResource.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/IOUtils.ReaderProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/IOUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/class-use/ClasspathResource.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/class-use/IOUtils.ReaderProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/class-use/IOUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/io/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/ArrayListProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/GenbankProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/SequenceFileProxyLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/StringProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/UniprotProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/class-use/ArrayListProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/class-use/GenbankProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/class-use/SequenceFileProxyLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/class-use/StringProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/class-use/UniprotProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/loader/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/FuzzyPoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcLocations.BondLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcLocations.GroupLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcLocations.OneOfLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcLocations.OrderLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcLocations.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/InsdcParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/LocationHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/SequenceLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/SimpleLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/SimplePoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/FuzzyPoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcLocations.BondLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcLocations.GroupLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcLocations.OneOfLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcLocations.OrderLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcLocations.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/InsdcParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/LocationHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/SequenceLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/SimpleLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/class-use/SimplePoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/AbstractLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/AccesionedLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/Location.Tools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/Location.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/Point.Resolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/Point.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/AbstractLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/AccesionedLocation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/Location.Tools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/Location.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/Point.Resolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/class-use/Point.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/location/template/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/AbstractReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/GenbankReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/ReferenceInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/class-use/AbstractReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/class-use/GenbankReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/class-use/ReferenceInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/reference/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/ArrayListSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/BitSequenceReader.BitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/BitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/FourBitSequenceReader.FourBitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/FourBitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/JoiningSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/SequenceAsStringHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/SingleCompoundSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/TwoBitSequenceReader.TwoBitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/TwoBitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/ArrayListSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/BitSequenceReader.BitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/BitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/FourBitSequenceReader.FourBitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/FourBitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/JoiningSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/SequenceAsStringHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/SingleCompoundSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/TwoBitSequenceReader.TwoBitArrayWorker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/class-use/TwoBitSequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/storage/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractCompoundTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractNucleotideCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractSequence.AnnotationType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/AbstractSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/Accessioned.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/ComplementCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/Compound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/CompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/CompoundTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/LightweightProfile.StringFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/LightweightProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/ProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/Sequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/SequenceMixin.SequenceIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/SequenceMixin.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/SequenceProxyView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/SequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/SequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractCompoundTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractNucleotideCompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractSequence.AnnotationType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/AbstractSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/Accessioned.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/ComplementCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/Compound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/CompoundSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/CompoundTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/LightweightProfile.StringFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/LightweightProfile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/ProxySequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/Sequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/SequenceMixin.SequenceIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/SequenceMixin.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/SequenceProxyView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/SequenceReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/class-use/SequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/template/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/CaseInsensitiveCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/DNAToRNATranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/Frame.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/RNAToAminoAcidTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/Table.CaseInsensitiveTriplet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/Table.Codon.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/Table.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/TranscriptionEngine.Builder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/TranscriptionEngine.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/CaseInsensitiveCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/DNAToRNATranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/Frame.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/RNAToAminoAcidTranslator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/Table.CaseInsensitiveTriplet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/Table.Codon.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/Table.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/TranscriptionEngine.Builder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/class-use/TranscriptionEngine.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/transcription/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/ComplementSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/ReversedSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/RnaSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/WindowedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/class-use/ComplementSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/class-use/ReversedSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/class-use/RnaSequenceView.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/class-use/WindowedSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/sequence/views/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/CRC64Checksum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/ConcurrencyTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/Equals.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/FileDownloadUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/FlatFileCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/Hashcoder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/InputStreamProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/PrettyXMLWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/SequenceTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/SingleLinkageClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/SoftHashMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/StringManipulationHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/UncompressInputStream.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/XMLHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/XMLWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/CRC64Checksum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/ConcurrencyTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/Equals.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/FileDownloadUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/FlatFileCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/Hashcoder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/InputStreamProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/PrettyXMLWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/SequenceTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/SingleLinkageClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/SoftHashMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/StringManipulationHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/UncompressInputStream.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/XMLHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/class-use/XMLWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/core/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/FastaSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/SequenceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/class-use/FastaSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/class-use/SequenceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/data/sequence/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/App.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/GeneFeatureHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/class-use/App.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/class-use/GeneFeatureHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/BlastHomologyHits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/GFF3FromUniprotBlastHits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/class-use/BlastHomologyHits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/class-use/GFF3FromUniprotBlastHits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/homology/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/Fastq.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/FastqBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/FastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/FastqTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/FastqVariant.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/FastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/IlluminaFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/IlluminaFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/ParseListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/SangerFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/SangerFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/SolexaFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/SolexaFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/StreamListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/Fastq.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/FastqBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/FastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/FastqTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/FastqVariant.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/FastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/IlluminaFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/IlluminaFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/ParseListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/SangerFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/SangerFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/SolexaFastqReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/SolexaFastqWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/class-use/StreamListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/io/fastq/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/Cytoband.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/CytobandParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/StainType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/class-use/Cytoband.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/class-use/CytobandParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/class-use/StainType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/cytoband/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/geneid/GeneIDXMLReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/geneid/class-use/GeneIDXMLReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/geneid/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/geneid/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/geneid/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/ChromPos.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/GeneChromosomePosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/GeneChromosomePositionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/GeneName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/GeneNamesParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/class-use/ChromPos.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/class-use/GeneChromosomePosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/class-use/GeneChromosomePositionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/class-use/GeneName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/class-use/GeneNamesParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/genename/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/Feature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/FeatureHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/FeatureI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/FeatureList.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/GCStats.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/GFF3Reader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/GFF3Writer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/GeneIDGFF2Reader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/GeneMarkGTFReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/LocIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/Location.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/Feature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/FeatureHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/FeatureI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/FeatureList.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/GCStats.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/GFF3Reader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/GFF3Writer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/GeneIDGFF2Reader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/GeneMarkGTFReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/LocIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/class-use/Location.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/gff/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/TwoBitFacade.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/TwoBitParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/class-use/TwoBitFacade.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/class-use/TwoBitParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/parsers/twobit/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/BlastXMLQuery.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/OutputHitsGFF.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/class-use/BlastXMLQuery.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/class-use/OutputHitsGFF.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/query/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/uniprot/UniprotToFasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/uniprot/class-use/UniprotToFasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/uniprot/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/uniprot/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/uniprot/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/ChromosomeMappingTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/ProteinMappingTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/SplitFasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/class-use/ChromosomeMappingTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/class-use/ProteinMappingTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/class-use/SplitFasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/genome/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/AbstractTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/AlreadyExistsException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/App.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/DefaultOps.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/IntegerOntology.IntTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/IntegerOntology.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/InvalidTermException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntoTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Ontology.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Ontology.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntologyException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntologyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntologyOps.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntologyTerm.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/OntologyTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/RemoteTerm.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/RemoteTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Synonym.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Term.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Term.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Triple.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Triple.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Variable.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/Variable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/AbstractTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/AlreadyExistsException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/App.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/DefaultOps.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/IntegerOntology.IntTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/IntegerOntology.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/InvalidTermException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntoTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Ontology.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Ontology.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntologyException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntologyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntologyOps.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntologyTerm.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/OntologyTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/RemoteTerm.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/RemoteTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Synonym.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Term.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Term.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Triple.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Triple.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Variable.Impl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/class-use/Variable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/GOParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/OboParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/TabDelimParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/class-use/GOParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/class-use/OboParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/class-use/TabDelimParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/OboFileEventListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/OboFileHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/OboFileParser.SOPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/OboFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/class-use/OboFileEventListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/class-use/OboFileHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/class-use/OboFileParser.SOPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/class-use/OboFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/obo/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/AbstractAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/Annotatable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/Annotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/AssertionFailure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/KeyedWeakReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/SmallAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/SmallMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/StaticMemberPlaceHolder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/WeakValueHashMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/AbstractAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/Annotatable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/Annotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/AssertionFailure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/KeyedWeakReference.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/SmallAnnotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/SmallMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/StaticMemberPlaceHolder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/class-use/WeakValueHashMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ontology/utils/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/Dataset.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/Site.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/class-use/Dataset.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/class-use/Site.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phosphosite/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/Comparison.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/DistanceMatrixCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/DistanceTreeEvaluator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/ForesterWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/TreeConstructor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/TreeConstructorType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/TreeType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/Comparison.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/DistanceMatrixCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/DistanceTreeEvaluator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/ForesterWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/TreeConstructor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/TreeConstructorType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/class-use/TreeType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/phylo/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/proteincomparisontool/HelloWorld.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/proteincomparisontool/class-use/HelloWorld.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/proteincomparisontool/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/proteincomparisontool/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/proteincomparisontool/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/Component.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ModificationCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ModificationCondition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ModificationConditionImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ModificationLinkage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ModificationOccurrenceType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ProteinModification.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ProteinModificationImpl.Builder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ProteinModificationImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/ProteinModificationRegistry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/Component.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ModificationCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ModificationCondition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ModificationConditionImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ModificationLinkage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ModificationOccurrenceType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ProteinModification.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ProteinModificationImpl.Builder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ProteinModificationImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/class-use/ProteinModificationRegistry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/ComponentXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/ModifiedCompoundXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/ProteinModificationXmlReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/StructureAtomXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/StructureGroupXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/class-use/ComponentXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/class-use/ModifiedCompoundXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/class-use/ProteinModificationXmlReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/class-use/StructureAtomXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/class-use/StructureGroupXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/ModifiedCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/ModifiedCompoundImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/ProteinModificationIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/StructureAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/StructureAtomLinkage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/StructureGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/StructureUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/ModifiedCompound.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/ModifiedCompoundImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/ProteinModificationIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/StructureAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/StructureAtomLinkage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/StructureGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/class-use/StructureUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/protmod/structure/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/Jronn.Range.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/Jronn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/ModelLoader.Model.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/ModelLoader.Threshold.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/ModelLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/NullOutputStream.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/ORonn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/ORonnModel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/RonnConstraint.Threshold.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/RonnConstraint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/Timer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/Jronn.Range.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/Jronn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/ModelLoader.Model.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/ModelLoader.Threshold.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/ModelLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/NullOutputStream.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/ORonn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/ORonnModel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/RonnConstraint.Threshold.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/RonnConstraint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/class-use/Timer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ronn/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AminoAcid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AminoAcidImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Atom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AtomImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AtomIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AtomPositionMap.GroupMatcher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AtomPositionMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/AugmentedResidueRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Author.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/BioAssemblyIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Bond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/BondImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/BondType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Calc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Chain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ChainImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/DBRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/DatabasePDBRevRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Element.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ElementType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/EntityInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/EntityType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ExperimentalTechnique.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Group.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/GroupIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/GroupType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/HetatomImpl.PerformanceBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/HetatomImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/JournalArticle.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Model.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Mutator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/NucleotideImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PDBCrystallographicInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PDBHeader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PDBRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PDBStatus.Status.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PDBStatus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PassthroughIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/PdbId.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ResidueNumber.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ResidueRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ResidueRangeAndLength.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/SeqMisMatch.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/SeqMisMatchImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Site.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StandardAminoAcid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/Structure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StructureException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StructureIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StructureIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StructureImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/StructureTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/SubstructureIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/URLIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/AFPTwister.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/AbstractStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/BioJavaStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/CallableStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ClusterAltAligs.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/MultipleStructureAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/StrucAligParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/StructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/StructureAlignmentFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/StructurePairAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/AbstractUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CECPParameters.DuplicationHint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CECPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CECalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeCPMain.CPRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeCPMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeCPUserArgumentProcessor.CeCPStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeCPUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeCalculatorEnhanced.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeParameters.ScoringStrategy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeSideChainMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeSideChainUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeUserArgumentProcessor.CeStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/CeUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/ConfigStrucAligParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/GuiWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/MatrixListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/OptimalCECPMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/OptimalCECPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/StartupParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/UserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/AbstractUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CECPParameters.DuplicationHint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CECPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CECalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeCPMain.CPRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeCPMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeCPUserArgumentProcessor.CeCPStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeCPUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeCalculatorEnhanced.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeParameters.ScoringStrategy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeSideChainMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeSideChainUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeUserArgumentProcessor.CeStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/CeUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/ConfigStrucAligParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/GuiWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/MatrixListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/OptimalCECPMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/OptimalCECPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/StartupParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/class-use/UserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/ce/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/AFPTwister.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/AbstractStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/BioJavaStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/CallableStructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/ClusterAltAligs.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/MultipleStructureAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/StrucAligParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/StructureAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/StructureAlignmentFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/class-use/StructurePairAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/PdbPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/StructureName.Source.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/StructureName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/class-use/PdbPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/class-use/StructureName.Source.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/class-use/StructureName.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/client/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/FatCat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/FatCatFlexible.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/FatCatRigid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/FatCatUserArgumentProcessor.FatCatStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/FatCatUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/AFPCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/AFPChainer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/AFPOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/AFPPostProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/FCAlignHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/FatCatAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/FatCatParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/SigEva.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/StructureAlignmentOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/AFPCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/AFPChainer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/AFPOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/AFPPostProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/FCAlignHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/FatCatAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/FatCatParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/SigEva.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/class-use/StructureAlignmentOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/calc/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/class-use/FatCat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/class-use/FatCatFlexible.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/class-use/FatCatRigid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/class-use/FatCatUserArgumentProcessor.FatCatStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/class-use/FatCatUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/fatcat/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/AboutDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/AlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/AlignmentCalculationRunnable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/AlignmentGui.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/AlignmentTextPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/ChooseDirAction.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/ConfigPDBInstallPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/DisplayAFP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/DotPlotPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/HelpDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/JPrintPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MemoryMonitor.Surface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MemoryMonitor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MenuCreator.DotPlotListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MenuCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MultipleAlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MultipleAlignmentGUI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MultipleAlignmentJmolDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MyAlignmentLoadListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MyDistMaxListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MyExportListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MyOpenPdbFileListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MySaveFileListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/MyTableRowSorter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/ParameterGUI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/SelectPDBPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/ShowPDBIDListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/StructureAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/StructureLoaderThread.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/SystemInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/AFPChainCoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/AligPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/AligPanelMouseMotionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/MultipleAligPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/MultipleAligPanelMouseMotionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/MultipleAlignmentCoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/MultipleStatusDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/StatusDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/AFPChainCoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/AligPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/AligPanelMouseMotionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/MultipleAligPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/MultipleAligPanelMouseMotionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/MultipleAlignmentCoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/MultipleStatusDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/class-use/StatusDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/aligpanel/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/AutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/DefaultAutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/JAutoSuggest.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/SCOPAutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/class-use/AutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/class-use/DefaultAutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/class-use/JAutoSuggest.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/class-use/SCOPAutoSuggestProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/autosuggest/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/AboutDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/AlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/AlignmentCalculationRunnable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/AlignmentGui.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/AlignmentTextPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/ChooseDirAction.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/ConfigPDBInstallPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/DisplayAFP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/DotPlotPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/HelpDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/JPrintPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MemoryMonitor.Surface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MemoryMonitor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MenuCreator.DotPlotListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MenuCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MultipleAlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MultipleAlignmentGUI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MultipleAlignmentJmolDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MyAlignmentLoadListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MyDistMaxListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MyExportListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MyOpenPdbFileListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MySaveFileListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/MyTableRowSorter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/ParameterGUI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/SelectPDBPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/ShowPDBIDListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/StructureAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/StructureLoaderThread.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/class-use/SystemInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/AbstractAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/AtomInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/AtomInfoParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/JmolPanel.JmolLoggerAdapter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/JmolPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/JmolTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/MultipleAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/MyJmolStatusListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/RasmolCommandListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/StructureAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/AbstractAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/AtomInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/AtomInfoParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/JmolPanel.JmolLoggerAdapter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/JmolPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/JmolTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/MultipleAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/MyJmolStatusListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/RasmolCommandListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/class-use/StructureAlignmentJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/jmol/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/gui/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/AligMatEl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/AlignUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/GapArray.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/IdxComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/IndexPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/JointFragments.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/AligMatEl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/AlignUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/GapArray.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/IdxComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/IndexPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/class-use/JointFragments.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/helper/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/AFP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/AFPChain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/AfpChainWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/class-use/AFP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/class-use/AFPChain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/class-use/AfpChainWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/model/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/AbstractScoresCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/Block.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/BlockImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/BlockSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/BlockSetImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/MultipleAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/MultipleAlignmentEnsemble.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/MultipleAlignmentEnsembleImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/MultipleAlignmentImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/ScoresCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/AbstractScoresCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/Block.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/BlockImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/BlockSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/BlockSetImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/MultipleAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/MultipleAlignmentEnsemble.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/MultipleAlignmentEnsembleImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/MultipleAlignmentImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/class-use/ScoresCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/MultipleMcMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/MultipleMcOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/MultipleMcParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/class-use/MultipleMcMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/class-use/MultipleMcOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/class-use/MultipleMcParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/mc/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/CoreSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/MultipleAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/MultipleAlignmentScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/MultipleAlignmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/MultipleAlignmentWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/MultipleSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/ReferenceSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/CoreSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/MultipleAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/MultipleAlignmentScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/MultipleAlignmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/MultipleAlignmentWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/MultipleSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/class-use/ReferenceSuperimposer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/multiple/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/AligNPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/Alignable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/AlignmentProgressListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/AlignmentResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/AltAligComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/AlternativeAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/FragmentJoiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/FragmentPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/Gotoh.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/StrCompAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/AligNPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/Alignable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/AlignmentProgressListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/AlignmentResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/AltAligComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/AlternativeAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/FragmentJoiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/FragmentPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/Gotoh.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/class-use/StrCompAlignment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/pairwise/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/QsAlign.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/QsAlignParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/QsAlignResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/QsRelation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/class-use/QsAlign.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/class-use/QsAlignParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/class-use/QsAlignResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/class-use/QsRelation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/quaternary/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/SmithWaterman3DParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/SmithWaterman3Daligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/SmithWatermanUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/class-use/SmithWaterman3DParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/class-use/SmithWaterman3Daligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/class-use/SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/class-use/SmithWatermanUserArgumentProcessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/seq/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/AFPAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/AFPChainScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/AlignmentTools.IdentityMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/AlignmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/AtomCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/CliTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/CollectionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/ConfigurationException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/ResourceManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/RotationAxis.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/SynchronizedOutFile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/URLConnectionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/UserConfiguration.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/AFPAlignmentDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/AFPChainScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/AlignmentTools.IdentityMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/AlignmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/AtomCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/CliTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/CollectionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/ConfigurationException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/ResourceManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/RotationAxis.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/SynchronizedOutFile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/URLConnectionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/class-use/UserConfiguration.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/AligUIManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/BrowserOpener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/ConfigXMLHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/JNLPProxy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/WebStartMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/class-use/AligUIManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/class-use/BrowserOpener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/class-use/ConfigXMLHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/class-use/JNLPProxy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/class-use/WebStartMain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/webstart/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/AFPChainFlipper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/AFPChainXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/AFPChainXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/MultipleAlignmentXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/MultipleAlignmentXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/PdbPairXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/PdbPairsMessage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/AFPChainFlipper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/AFPChainXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/AFPChainXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/MultipleAlignmentXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/MultipleAlignmentXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/PdbPairXMLConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/class-use/PdbPairsMessage.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/align/xml/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/AsaCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/GroupAsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/class-use/AsaCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/class-use/GroupAsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/asa/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/BasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/MismatchedBasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/TertiaryBasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/class-use/BasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/class-use/MismatchedBasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/class-use/TertiaryBasePairParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/basepairs/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathFragment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/CathSegment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathFragment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/class-use/CathSegment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cath/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/AllChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemComp.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompBond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompDescriptor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompGroupFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemCompTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ChemicalComponentDictionary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/DownloadChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/MetalBondDistance.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/PolymerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ReducedChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ResidueType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/ZipChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/AllChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemComp.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompBond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompDescriptor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompGroupFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemCompTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ChemicalComponentDictionary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/DownloadChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/MetalBondDistance.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/PolymerType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ReducedChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ResidueType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/class-use/ZipChemCompProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/chem/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AminoAcid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AminoAcidImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Atom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AtomImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AtomIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AtomPositionMap.GroupMatcher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AtomPositionMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/AugmentedResidueRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Author.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/BioAssemblyIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Bond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/BondImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/BondType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Calc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Chain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ChainImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/DBRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/DatabasePDBRevRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Element.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ElementType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/EntityInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/EntityType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ExperimentalTechnique.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Group.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/GroupIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/GroupType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/HetatomImpl.PerformanceBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/HetatomImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/JournalArticle.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Model.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Mutator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/NucleotideImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PDBCrystallographicInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PDBHeader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PDBRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PDBStatus.Status.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PDBStatus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PassthroughIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/PdbId.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ResidueNumber.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ResidueRange.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/ResidueRangeAndLength.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/SeqMisMatch.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/SeqMisMatchImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Site.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StandardAminoAcid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/Structure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StructureException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StructureIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StructureIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StructureImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/StructureTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/SubstructureIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/class-use/URLIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/Subunit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/SubunitCluster.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/SubunitClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/SubunitClustererMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/SubunitClustererParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/SubunitExtractor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/Subunit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/SubunitCluster.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/SubunitClusterer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/SubunitClustererMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/SubunitClustererParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/class-use/SubunitExtractor.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/cluster/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/AtomContact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/AtomContactSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/AtomIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/BoundingBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/Contact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/Grid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/GridCell.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/GroupContact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/GroupContactSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/InterfaceFinder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/Pair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/StructureInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/StructureInterfaceCluster.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/StructureInterfaceList.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/AtomContact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/AtomContactSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/AtomIdentifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/BoundingBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/Contact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/Grid.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/GridCell.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/GroupContact.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/GroupContactSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/InterfaceFinder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/Pair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/StructureInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/StructureInterfaceCluster.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/class-use/StructureInterfaceList.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/contact/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/DomainProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/LocalProteinDomainParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/SerializableCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/class-use/DomainProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/class-use/LocalProteinDomainParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/class-use/SerializableCache.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/ClusterDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/Cut.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/CutDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/CutSites.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/CutValues.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/Domain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/GetDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/PDPDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/PDPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/Segment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/SegmentComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/ShortSegmentRemover.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/ClusterDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/Cut.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/CutDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/CutSites.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/CutValues.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/Domain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/GetDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/PDPDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/PDPParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/Segment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/SegmentComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/class-use/ShortSegmentRemover.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/domain/pdp/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/EcodDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/EcodDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/EcodFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/EcodInstallation.EcodParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/EcodInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/class-use/EcodDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/class-use/EcodDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/class-use/EcodFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/class-use/EcodInstallation.EcodParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/class-use/EcodInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/ecod/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/CalcPoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/Matrices.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/MomentsOfInertia.SymmetryClass.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/MomentsOfInertia.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPositionAbstract.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPositionQCP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPositionQuat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPositionSVD.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/SuperPositions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/UnitQuaternions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/CalcPoint.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/Matrices.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/MomentsOfInertia.SymmetryClass.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/MomentsOfInertia.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPositionAbstract.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPositionQCP.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPositionQuat.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPositionSVD.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/SuperPositions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/class-use/UnitQuaternions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/geometry/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/BiojavaJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/JMatrixPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/JmolViewerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/RenderStyle.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/ScaleableMatrixPanel.GradientRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/ScaleableMatrixPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/Selection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/SelectionImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/SequenceDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/StructureViewer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/WrapLayout.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/BiojavaJmol.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/JMatrixPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/JmolViewerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/RenderStyle.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/ScaleableMatrixPanel.GradientRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/ScaleableMatrixPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/Selection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/SelectionImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/SequenceDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/StructureViewer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/class-use/WrapLayout.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/AlignmentPositionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/JmolAlignedPositionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/class-use/AlignmentPositionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/class-use/JmolAlignedPositionListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/events/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/AlignedPosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/AlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/AlternativeAlignmentFrame.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/CoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/MenuCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/PDBDirPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/PDBServerPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/PDBUploadPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/ScopInstallationInstance.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/ScopSelectPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/SelectMultiplePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/SequenceMouseListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/SequenceScalePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/StructurePairSelector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/AlignedPosition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/AlignmentCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/AlternativeAlignmentFrame.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/CoordManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/MenuCreator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/PDBDirPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/PDBServerPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/PDBUploadPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/ScopInstallationInstance.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/ScopSelectPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/SelectMultiplePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/SequenceMouseListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/SequenceScalePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/class-use/StructurePairSelector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/ColorInterpolator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/ColorUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/ContinuousColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/ContinuousColorMapperTransform.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/DefaultMatrixMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/GradientMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/GradientPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/HSVColorSpace.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/LinearColorInterpolator.InterpolationDirection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/LinearColorInterpolator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/LogColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/SqrtColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/ColorInterpolator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/ColorUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/ContinuousColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/ContinuousColorMapperTransform.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/DefaultMatrixMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/GradientMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/GradientPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/HSVColorSpace.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/LinearColorInterpolator.InterpolationDirection.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/LinearColorInterpolator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/LogColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/class-use/SqrtColorMapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/color/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/gui/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/BcifFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/BondMaker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/CAConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/ChargeAdder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/CifFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/EntityFinder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/FastaAFPChainConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/FastaStructureParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/FileConvert.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/FileParsingParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/GroupToSDF.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/LocalPDBDirectory.FetchBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/LocalPDBDirectory.ObsoleteBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/LocalPDBDirectory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/MMTFFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/PDBBioAssemblyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/PDBFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/PDBFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/PDBParseException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/SSBondImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/SeqRes2AtomAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/StructureFiletype.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/StructureIOFile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/StructureProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/StructureSequenceMatcher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/AbstractCifFileSupplier.WrappedAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/AbstractCifFileSupplier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/ChemCompConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/ChemCompConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/ChemCompConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifBean.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifChainSupplierImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifFileConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifFileSupplier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifStructureConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifStructureConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/CifStructureSupplierImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/MetalBondConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/MetalBondConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/MetalBondConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/AbstractCifFileSupplier.WrappedAtom.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/AbstractCifFileSupplier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/ChemCompConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/ChemCompConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/ChemCompConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifBean.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifChainSupplierImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifFileConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifFileSupplier.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifStructureConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifStructureConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifStructureConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/CifStructureSupplierImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/MetalBondConsumer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/MetalBondConsumerImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/class-use/MetalBondConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/cif/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/BcifFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/BondMaker.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/CAConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/ChargeAdder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/CifFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/EntityFinder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/FastaAFPChainConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/FastaStructureParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/FileConvert.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/FileParsingParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/GroupToSDF.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.FetchBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.ObsoleteBehavior.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/MMTFFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/PDBBioAssemblyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/PDBFileParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/PDBFileReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/PDBParseException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/SSBondImpl.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/SeqRes2AtomAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/StructureFiletype.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/StructureIOFile.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/StructureProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/class-use/StructureSequenceMatcher.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/MmtfActions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/MmtfStructureWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/MmtfSummaryDataBean.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/MmtfUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/class-use/MmtfActions.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/class-use/MmtfStructureReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/class-use/MmtfStructureWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/class-use/MmtfSummaryDataBean.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/class-use/MmtfUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/mmtf/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsChainEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsChainToUniprotMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsEntity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsMappingProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsResidue.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsSegment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/SiftsXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsChainEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsChainToUniprotMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsEntity.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsMappingProvider.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsResidue.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsSegment.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/class-use/SiftsXMLParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/sifts/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/PDBTemporaryStorageUtils.LinkRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/PDBTemporaryStorageUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/class-use/PDBTemporaryStorageUtils.LinkRecord.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/class-use/PDBTemporaryStorageUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/io/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/CholeskyDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/EigenvalueDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/LUDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/Maths.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/Matrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/QRDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/SingularValueDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/CholeskyDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/EigenvalueDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/LUDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/Maths.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/Matrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/QRDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/class-use/SingularValueDecomposition.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/jama/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/SparseSquareMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/SparseVector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/SymbolTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/class-use/SparseSquareMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/class-use/SparseVector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/class-use/SymbolTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/math/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/BioAssemblyInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/BioAssemblyTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/BiologicalAssemblyBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/BiologicalAssemblyTransformation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/CartesianProduct.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/OperatorResolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/OrderedPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/BioAssemblyInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/BioAssemblyTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/BiologicalAssemblyBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/BiologicalAssemblyTransformation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/CartesianProduct.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/OperatorResolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/class-use/OrderedPair.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/quaternary/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/Astral.AstralSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/Astral.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/BerkeleyScopInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/LocalScopDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopDescription.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopIOException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopMirror.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/ScopNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/Astral.AstralSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/Astral.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/BerkeleyScopInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/LocalScopDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopCategory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopDatabase.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopDescription.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopIOException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopInstallation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopMirror.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/class-use/ScopNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/scop/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/BetaBridge.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/BridgeType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/DSSPParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/HBond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/Ladder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucElement.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucState.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/SecStrucType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/BetaBridge.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/BridgeType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/DSSPParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/HBond.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/Ladder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucElement.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucState.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/class-use/SecStrucType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/secstruc/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/AxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/HelixAxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/RotationAxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/class-use/AxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/class-use/HelixAxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/class-use/RotationAxisAligner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/axis/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/C2RotationSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/HelicalRepeatUnit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/Helix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/HelixExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/HelixLayers.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/HelixSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/PermutationGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSuperpositionScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetryParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetryResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetryScores.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetrySolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/QuatSymmetrySubunits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/Rotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/RotationGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/RotationSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/Stoichiometry.StringOverflowStrategy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/Stoichiometry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/SymmetryPerceptionMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/SystematicSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/C2RotationSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/HelicalRepeatUnit.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/Helix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/HelixExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/HelixLayers.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/HelixSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/PermutationGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSuperpositionScorer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryScores.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetrySolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetrySubunits.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/Rotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/RotationGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/RotationSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/Stoichiometry.StringOverflowStrategy.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/Stoichiometry.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/SymmetryPerceptionMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/class-use/SystematicSolver.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/core/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/DistanceBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/IcosahedralSampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/Icosahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/Octahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/Polyhedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/Prism.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/RectangularPrism.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/SphereSampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/Tetrahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/DistanceBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/IcosahedralSampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/Octahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/Polyhedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/Prism.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/RectangularPrism.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/SphereSampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/class-use/Tetrahedron.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/geometry/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryCalc.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryDisplay.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryGui.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryListener.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/gui/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/AngleOrderDetectorPlus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.OrderDetectorMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.RefineMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.SymmetryType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CeSymm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/OrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/RefinerFailedException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/ResidueGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SequenceFunctionOrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SequenceFunctionRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SymmOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SymmetryAxes.Axis.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SymmetryAxes.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/SymmetryRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/AngleOrderDetectorPlus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.OrderDetectorMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.RefineMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.SymmetryType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymm.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymmIterative.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymmResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/GraphComponentOrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/GraphComponentRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/OrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/RefinerFailedException.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/ResidueGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SequenceFunctionOrderDetector.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SequenceFunctionRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SymmOptimizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryAxes.Axis.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryAxes.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryRefiner.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/internal/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/ColorConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorC1.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorCn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorDn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorH.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorPointGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorT.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/ColorConverter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorC1.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorCn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorDn.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorH.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorI.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorPointGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGeneratorT.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/jmolScript/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/ChainSignature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/ProteinComplexSignature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/class-use/ChainSignature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/class-use/ProteinComplexSignature.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/misc/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/BlastClustReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/PermutationGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/PowerSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/class-use/BlastClustReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/class-use/PermutationGenerator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/class-use/PowerSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/class-use/SymmetryTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/symmetry/utils/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/BravaisLattice.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/CrystalBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/CrystalCell.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/CrystalTransform.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/SpaceGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/SymoplibParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/TransformType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/UnitCellBoundingBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/BravaisLattice.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/CrystalBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/CrystalCell.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/CrystalTransform.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/SpaceGroup.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/SymoplibParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/TransformType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/class-use/UnitCellBoundingBox.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/SpaceGroupMapElements.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/SpaceGroupMapRoot.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/TransfAlgebraicAdapter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/TreeMapSpaceGroupWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/class-use/SpaceGroupMapElements.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/class-use/SpaceGroupMapRoot.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/class-use/TransfAlgebraicAdapter.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/class-use/TreeMapSpaceGroupWrapper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/io/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/structure/xtal/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxCC.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxCoefficient.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxMart.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxR.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxScore.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/CoxVariables.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/ResidualsCoxph.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/ResidualsCoxph.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/RiskInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/StrataInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/SurvFitInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/SurvivalInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/SurvivalInfoHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/SurvivalInfoIndex.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/WaldTest.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/WaldTestInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxCC.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxCoefficient.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxMart.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxR.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxScore.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/CoxVariables.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/ResidualsCoxph.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/ResidualsCoxph.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/RiskInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/StrataInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/SurvFitInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/SurvivalInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/SurvivalInfoHelper.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/SurvivalInfoIndex.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/WaldTest.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/class-use/WaldTestInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/CoxComparatorInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/CoxVariablesOverallModelFitComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/CoxVariablesVariableComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/MeanModelComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/SurvivalInfoComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/SurvivalInfoValueComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/CoxComparatorInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/CoxVariablesOverallModelFitComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/CoxVariablesVariableComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/MeanModelComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/SurvivalInfoComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/class-use/SurvivalInfoValueComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/comparators/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/Matrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/StdArrayIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/class-use/Matrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/class-use/StdArrayIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/matrix/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/AgScore.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/ChiSq.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/Cholesky2.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/Chsolve2.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/class-use/AgScore.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/class-use/ChiSq.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/class-use/Cholesky2.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/class-use/Chsolve2.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/cox/stats/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/ChangeValue.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/CompactCharSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/HeaderInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/WorkSheet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/class-use/ChangeValue.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/class-use/CompactCharSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/class-use/HeaderInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/class-use/WorkSheet.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/data/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/CensorStatus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/CensorStatusSelect.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/ExpressionFigure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/GroupResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/KMFigureInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/NumbersAtRiskPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/SurvFitKM.ConfLower.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/SurvFitKM.ConfType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/SurvFitKM.Error.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/SurvFitKM.Method.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/SurvFitKM.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/CensorStatus.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/CensorStatusSelect.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/ExpressionFigure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/GroupResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/KMFigureInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/KaplanMeierFigure.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/NumbersAtRiskPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/SurvFitKM.ConfLower.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/SurvFitKM.ConfType.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/SurvFitKM.Error.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/SurvFitKM.Method.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/class-use/SurvFitKM.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/figure/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/ClinicalMetaDataOutcome.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/DiscreteQuantizerInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/MeanQuantizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/MetaDataInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/class-use/ClinicalMetaDataOutcome.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/class-use/DiscreteQuantizerInterface.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/class-use/MeanQuantizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/class-use/MetaDataInfo.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/survival/kaplanmeier/metadata/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/RemotePairwiseAlignmentOutputProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/RemotePairwiseAlignmentProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/RemotePairwiseAlignmentService.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/class-use/RemotePairwiseAlignmentOutputProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/class-use/RemotePairwiseAlignmentProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/class-use/RemotePairwiseAlignmentService.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastAlignmentParameterEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastJob.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastMatrixEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastOutputAlignmentFormatEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastOutputFormatEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastOutputParameterEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/BlastProgramEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/MapToStringTransformer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/NCBIQBlastAlignmentProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/NCBIQBlastOutputProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/NCBIQBlastService.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastAlignmentParameterEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastJob.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastMatrixEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastOutputAlignmentFormatEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastOutputFormatEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastOutputParameterEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/BlastProgramEnum.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/MapToStringTransformer.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/NCBIQBlastAlignmentProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/NCBIQBlastOutputProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/class-use/NCBIQBlastService.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/alignment/qblast/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/HmmerDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/HmmerResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/HmmerScan.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/RemoteHmmerScan.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/class-use/HmmerDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/class-use/HmmerResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/class-use/HmmerScan.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/class-use/RemoteHmmerScan.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/biojava/nbio/ws/hmmer/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/AncestralTaxonomyInference.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/AncestralTaxonomyInferenceException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/TaxonomyDataManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/class-use/AncestralTaxonomyInference.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/class-use/AncestralTaxonomyInferenceException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/class-use/TaxonomyDataManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/analysis/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/annotator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/check_fasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/annotator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/check_fasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/confadd.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/count_support.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/decorator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/decoratorX.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/dom_dup.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/fasta_split.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/gene_tree_preprocess.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/goac.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/gsdi.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/mcc.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/meta_ontologizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/msa_compactor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/nj.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/obo_tool.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/pccx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/pfam2go_extractor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/pfam_go.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/pfamacc2go.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/pfamacc2pfamid.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/phylostrip.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/phyloxml_converter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/rio.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/support_statistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/support_transfer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/surfacing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/class-use/table2fasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/confadd.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/count_support.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/decorator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/decoratorX.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/dom_dup.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/fasta_split.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/gene_tree_preprocess.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/goac.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/gsdi.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/mcc.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/meta_ontologizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/msa_compactor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/nj.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/obo_tool.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/pccx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/pfam2go_extractor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/pfam_go.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/pfamacc2go.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/pfamacc2pfamid.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/phylostrip.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/phyloxml_converter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/rio.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/support_statistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/support_transfer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/surfacing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/application/table2fasta.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/aa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/aaa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/aa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/aaa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/core_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/domainloss_replacement.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/genome_counts_for_once_appearing_dcs.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/get_distances.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/get_genome_counts_per_char.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/get_loss_nodes.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/get_shared_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/get_subtree_specific_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/inverted_dcs.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/map_lengths.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/phylo2coloredgraphics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/phylo2graphics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/reinv_count.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/set_comparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/shared_chars_in_ext_nodes.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/simple_node_processor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/subtree_feature_count.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/tax_code_cleaner.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/class-use/wiki_examples.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/core_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/domainloss_replacement.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/genome_counts_for_once_appearing_dcs.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/get_distances.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/get_genome_counts_per_char.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/get_loss_nodes.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/get_shared_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/get_subtree_specific_chars.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/inverted_dcs.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/map_lengths.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/phylo2coloredgraphics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/phylo2graphics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/reinv_count.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/set_comparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/shared_chars_in_ext_nodes.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/simple_node_processor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/subtree_feature_count.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/tax_code_cleaner.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/applications/wiki_examples.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/AptxUtil.GraphicsExportType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/AptxUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Archaeopteryx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/ArchaeopteryxA.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/ArchaeopteryxE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Configuration.EXT_NODE_DATA_RETURN_ON.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Configuration.UI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Configuration.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Constants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/FontChooser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/MainFrame.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/MainFrameApplet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/MainFrameApplication.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/MainPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Options.CLADOGRAM_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Options.NODE_LABEL_DIRECTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Options.PHYLOGENY_GRAPHICS_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/Options.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/TreeColorSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/TreeFontSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/TreePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/TreePanelUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/UrlTreeReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/AptxUtil.GraphicsExportType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/AptxUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Archaeopteryx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/ArchaeopteryxA.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/ArchaeopteryxE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Configuration.EXT_NODE_DATA_RETURN_ON.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Configuration.UI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Configuration.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Constants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/FontChooser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/MainFrame.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/MainFrameApplet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/MainFrameApplication.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/MainPanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Options.CLADOGRAM_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Options.NODE_LABEL_DIRECTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Options.PHYLOGENY_GRAPHICS_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/Options.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/TreeColorSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/TreeFontSet.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/TreePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/TreePanelUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/class-use/UrlTreeReader.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/RenderableMsaSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/RenderableVector.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/class-use/RenderableDomainArchitecture.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/class-use/RenderableMsaSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/class-use/RenderablePhylogenyData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/class-use/RenderableVector.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/phylogeny/data/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/Blast.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/ImageLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/InferenceManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/PhyloInferenceDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/PhylogeneticInferrer.MSA_PRG.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/PhylogeneticInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/ProcessPool.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/ProcessRunning.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/RunnableProcess.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/SequenceDataRetriver.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/AncestralTaxonomyInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/Blast.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/ImageLoader.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/InferenceManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/PhyloInferenceDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/PhylogeneticInferenceOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/PhylogeneticInferrer.MSA_PRG.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/PhylogeneticInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/ProcessPool.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/ProcessRunning.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/RunnableProcess.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/class-use/SequenceDataRetriver.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/tools/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/BasicPhylogeniesWebserviceClient.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/WebserviceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/WebservicesManager.WsPhylogenyFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/WebservicesManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/class-use/BasicPhylogeniesWebserviceClient.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/class-use/PhylogeniesWebserviceClient.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/class-use/WebserviceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/class-use/WebservicesManager.WsPhylogenyFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/class-use/WebservicesManager.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/archaeopteryx/webservices/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/IntMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/Queue.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/class-use/IntMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/class-use/Queue.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/datastructures/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/AbstractRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/DevelopmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/Hello3d.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/HmmerRest.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/MsaRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/RandomThing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/ResidueRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/Time.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/AbstractRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/DevelopmentTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/Hello3d.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/HmmerRest.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/MsaRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/RandomThing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/ResidueRenderer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/Time.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/neTest.DoublePointer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/class-use/neTest.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/neTest.DoublePointer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/neTest.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/development/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/TestPhylogenyReconstruction.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/class-use/TestPhylogenyReconstruction.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/NeighborJoining.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/NeighborJoiningF.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/NeighborJoiningR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/PairwiseDistanceCalculator.PWD_DISTANCE_METHOD.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/PairwiseDistanceCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/Sarray.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/Sset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/NeighborJoining.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/NeighborJoiningF.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/NeighborJoiningR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/PairwiseDistanceCalculator.PWD_DISTANCE_METHOD.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/PairwiseDistanceCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/Sarray.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/class-use/Sset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/distance/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/CharacterStateMatrix.BinaryStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/CharacterStateMatrix.Format.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/CharacterStateMatrix.GainLossStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/CharacterStateMatrix.NucleotideStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/CharacterStateMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/BasicCharacterStateMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/CharacterStateMatrix.BinaryStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/CharacterStateMatrix.Format.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/CharacterStateMatrix.GainLossStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/CharacterStateMatrix.NucleotideStates.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/class-use/CharacterStateMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/character/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/DistanceMatrix.Format.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/DistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/class-use/BasicSymmetricalDistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/class-use/DistanceMatrix.Format.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/class-use/DistanceMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/matrix/distance/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/DolloParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/FitchParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/SankoffParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/class-use/DolloParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/class-use/FitchParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/class-use/SankoffParsimony.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/parsimony/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/tools/BootstrapResampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/tools/class-use/BootstrapResampler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/tools/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/tools/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/evoinference/tools/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/BasicGoRelationship.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/BasicGoSubset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/BasicGoTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/BasicGoXRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoId.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoNameSpace.GoNamespaceType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoNameSpace.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoRelationship.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoRelationship.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoSubset.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoSubset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoXRef.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/GoXRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/Mapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/OBOparser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/OBOparser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/PfamToGoMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/PfamToGoParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/TestGo.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/BasicGoRelationship.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/BasicGoSubset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/BasicGoTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/BasicGoXRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoId.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoNameSpace.GoNamespaceType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoNameSpace.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoRelationship.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoRelationship.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoSubset.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoSubset.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoTerm.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoXRef.Type.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/GoXRef.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/Mapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/OBOparser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/OBOparser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/PfamToGoMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/PfamToGoParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/class-use/TestGo.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/MetaOntologizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/OntologizerResult.TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/OntologizerResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/class-use/MetaOntologizer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/class-use/OntologizerResult.TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/class-use/OntologizerResult.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/etc/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/go/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/FastaParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/GeneralMsaParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmPfamOutputParser.FilterType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmPfamOutputParser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmPfamOutputParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmscanPerDomainTableParser.FilterType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmscanPerDomainTableParser.INDIVIDUAL_SCORE_CUTOFF.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmscanPerDomainTableParser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/HmmscanPerDomainTableParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/IteratingPhylogenyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/PhylogenyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/SymmetricalDistanceMatrixParser.InputMatrixType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/SymmetricalDistanceMatrixParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/FastaParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/GeneralMsaParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmPfamOutputParser.FilterType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmPfamOutputParser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmPfamOutputParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmscanPerDomainTableParser.FilterType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmscanPerDomainTableParser.INDIVIDUAL_SCORE_CUTOFF.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmscanPerDomainTableParser.ReturnType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/HmmscanPerDomainTableParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/IteratingPhylogenyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/PhylogenyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/SymmetricalDistanceMatrixParser.InputMatrixType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/class-use/SymmetricalDistanceMatrixParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/NexusCharactersParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/NexusConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/NexusFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/NexusPhylogeniesParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/PaupLogParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/NexusBinaryStatesMatrixParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/NexusCharactersParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/NexusConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/NexusFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/NexusPhylogeniesParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/class-use/PaupLogParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nexus/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/NHXFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/NHXParser.TAXONOMY_EXTRACTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/NHXParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/NHXtags.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/class-use/NHXFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/class-use/NHXParser.TAXONOMY_EXTRACTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/class-use/NHXParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/class-use/NHXtags.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/nhx/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/PhyloXmlUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/XmlElement.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlDataFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/PhyloXmlUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/class-use/XmlElement.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/AccessionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/AnnotationParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/BranchWidthParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/ColorParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/ConfidenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/DateParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/DistributionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/EventParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/IdentifierParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/PointParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/PolygonParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/PropertyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/ReferenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/SequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/TaxonomyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/UriParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/AccessionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/AnnotationParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/BinaryCharactersParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/BranchWidthParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/ColorParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/ConfidenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/DateParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/DistributionParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/DomainArchitectureParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/EventParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/IdentifierParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/PhylogenyDataPhyloXmlParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/PointParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/PolygonParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/PropertyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/ProteinDomainParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/ReferenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/SequenceParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/SequenceRelationParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/TaxonomyParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/class-use/UriParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/data/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/phyloxml/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/TolParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/TolXmlHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/TolXmlMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/class-use/TolParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/class-use/TolXmlHandler.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/class-use/TolXmlMapping.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/tol/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/ParserUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/PhylogenyParserException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/class-use/ParserUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/class-use/PhylogenyParserException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/parsers/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/PhyloXmlNodeWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/PhylogenyWriter.FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/PhylogenyWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/SequenceWriter.SEQ_FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/SequenceWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/class-use/PhyloXmlNodeWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/class-use/PhylogenyWriter.FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/class-use/PhylogenyWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/class-use/SequenceWriter.SEQ_FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/class-use/SequenceWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/io/writers/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/BasicMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/ClustalOmega.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/DeleteableMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/Mafft.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/Msa.MSA_FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/Msa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/MsaFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/MsaInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/MsaMethods.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/ResampleableMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/BasicMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/ClustalOmega.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/DeleteableMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/Mafft.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/Msa.MSA_FORMAT.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/Msa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/MsaFormatException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/MsaInferrer.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/MsaMethods.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/class-use/ResampleableMsa.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/Chart.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/GapContribution.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/MsaCompactor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/MsaProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/class-use/Chart.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/class-use/GapContribution.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/class-use/MsaCompactor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/class-use/MsaProperties.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/msa_compactor/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/BranchCountingBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/BranchLengthBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/Coverage.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/CoverageCalculationMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/CoverageCalculationOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/CoverageCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/CoverageExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/ExternalNodeBasedCoverage.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/ExternalNodeBasedCoverageMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/LogBranchLengthBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/ModelingUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/ScoringMethodForExternalNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/TestPccx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/BasicExternalNodeBasedCoverageExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/BranchCountingBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/BranchLengthBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/Coverage.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/CoverageCalculationMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/CoverageCalculationOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/CoverageCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/CoverageExtender.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/ExternalNodeBasedCoverage.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/ExternalNodeBasedCoverageMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/ExternalNodeBasedCoverageMethodOptions.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/LogBranchLengthBasedScoringMethod.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/ModelingUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/ScoringMethodForExternalNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/class-use/TestPccx.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/pccx/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/Phylogeny.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyBranch.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyMethods.DESCENDANT_SORT_PRIORITY.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyMethods.PhylogenyNodeField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyMethods.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyNode.NH_CONVERSION_SUPPORT_VALUE_STYLE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/PhylogenyNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/Phylogeny.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyBranch.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyMethods.DESCENDANT_SORT_PRIORITY.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyMethods.PhylogenyNodeField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyMethods.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyNode.NH_CONVERSION_SUPPORT_VALUE_STYLE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/class-use/PhylogenyNode.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Accession.Source.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Accession.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Annotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/BinaryCharacters.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/BranchColor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/BranchData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/BranchWidth.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Confidence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Date.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Distribution.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/DomainArchitecture.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Event.EventType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Event.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Identifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/MultipleUris.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeDataField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeVisualData.FontType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeVisualData.NodeFill.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeVisualData.NodeShape.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/NodeVisualData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/PhylogenyData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/PhylogenyDataUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Point.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Polygon.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/PropertiesMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Property.AppliesTo.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Property.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/ProteinDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Reference.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Sequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/SequenceRelation.SEQUENCE_RELATION_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/SequenceRelation.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Taxonomy.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/Uri.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Accession.Source.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Accession.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Annotation.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/BinaryCharacters.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/BranchColor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/BranchData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/BranchWidth.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Confidence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Date.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Distribution.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/DomainArchitecture.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Event.EventType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Event.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Identifier.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/MultipleUris.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeDataField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeVisualData.FontType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeVisualData.NodeFill.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeVisualData.NodeShape.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/NodeVisualData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/PhylogenyData.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/PhylogenyDataUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Point.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Polygon.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/PropertiesMap.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Property.AppliesTo.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Property.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/ProteinDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Reference.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Sequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/SequenceRelation.SEQUENCE_RELATION_TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/SequenceRelation.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Taxonomy.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/class-use/Uri.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/data/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/PhylogenyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/class-use/ParserBasedPhylogenyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/class-use/PhylogenyFactory.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/factories/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/ExternalForwardIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/LevelOrderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/PhylogenyNodeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/PostOrderStackObject.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/PostorderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/PreorderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/ExternalForwardIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/LevelOrderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/PhylogenyNodeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/PostOrderStackObject.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/PostorderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/class-use/PreorderTreeIterator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/iterators/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/phylogeny/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/BasicDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/BasicProtein.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/BinaryDomainCombination.DomainCombinationType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/BinaryDomainCombination.OutputFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/BinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/Domain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/Protein.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/ProteinId.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/BasicDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/BasicProtein.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/BinaryDomainCombination.DomainCombinationType.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/BinaryDomainCombination.OutputFormat.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/BinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/Domain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/Protein.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/class-use/ProteinId.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/protein/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/RIO.REROOTING.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/RIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/RIOException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/TestRIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/class-use/RIO.REROOTING.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/class-use/RIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/class-use/RIOException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/class-use/TestRIO.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/rio/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/GSDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/GSDII.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/GSDIR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDIException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDIR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDIutil.ALGORITHM.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDIutil.TaxonomyComparisonBase.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/SDIutil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/TestGSDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/GSDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/GSDII.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/GSDIR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDIException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDIR.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDIutil.ALGORITHM.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDIutil.TaxonomyComparisonBase.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/SDIutil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/class-use/TestGSDI.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sdi/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/BasicSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/MolecularSequence.TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/MolecularSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/class-use/BasicSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/class-use/MolecularSequence.TYPE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/class-use/MolecularSequence.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/sequence/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/BasicSpecies.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/Species.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/class-use/BasicSpecies.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/class-use/Species.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/species/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/AdjactantDirectedCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/BasicBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/BasicCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/BasicDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/BasicGenomeWideCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/CombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DirectedBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DirectedCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainCountsDifferenceUtil.COPY_CALCULATION_MODE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainCountsDifferenceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainLengths.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainLengthsTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainParsimonyCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarity.DomainSimilarityScoring.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarity.DomainSimilaritySortField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarity.PRINT_OPTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarityCalculator.Detailedness.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarityCalculator.GoAnnotationOutput.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/DomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/GenomeWideCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/MappingResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/PairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/PairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/PairwiseGenomeComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/SimpleDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/SurfacingConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/SurfacingUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/TestSurfacing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/AdjactantDirectedBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/AdjactantDirectedCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/BasicBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/BasicCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/BasicDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/BasicGenomeWideCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/CombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/CombinationsBasedPairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/CombinationsBasedPairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/CountsBasedPairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DirectedBinaryDomainCombination.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DirectedCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainArchitectureBasedGenomeSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainCountsBasedPairwiseSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainCountsDifferenceUtil.COPY_CALCULATION_MODE.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainCountsDifferenceUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainLengths.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainLengthsTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainParsimonyCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarity.DomainSimilarityScoring.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarity.DomainSimilaritySortField.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarity.PRINT_OPTION.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarityCalculator.Detailedness.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarityCalculator.GoAnnotationOutput.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/DomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/GenomeWideCombinableDomains.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/MappingResults.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/PairwiseDomainSimilarity.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/PairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/PairwiseGenomeComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/ProteinCountsBasedPairwiseDomainSimilarityCalculator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/SimpleDomain.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/SurfacingConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/SurfacingUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/class-use/TestSurfacing.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/surfacing/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/class-use/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/Example1.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/Example2.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/Example3.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/Example4.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/Example5.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/class-use/Example1.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/class-use/Example2.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/class-use/Example3.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/class-use/Example4.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/class-use/Example5.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/examples/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/test/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/ConfidenceAssessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/PhylogenyDecorator.FIELD.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/PhylogenyDecorator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/SupportCount.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/TreeSplitMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/class-use/ConfidenceAssessor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/class-use/PhylogenyDecorator.FIELD.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/class-use/PhylogenyDecorator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/class-use/SupportCount.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/class-use/TreeSplitMatrix.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/tools/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/AsciiHistogram.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/BasicDescriptiveStatistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/BasicTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/BasicTableParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/CommandLineArguments.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/CommandProcessBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/DescriptiveStatistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/EasyWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/ExternalProgram.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/FailedConditionCheckException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/ForesterConstants.PhylogeneticTreeFormats.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/ForesterConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/ForesterUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/GeneralTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/IllegalFormatUseException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/SequenceAccessionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/StringInt.DescendingIntComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/StringInt.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/SystemCommandExecutor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/TaxonomyColors.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/TaxonomyUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/WindowsUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/AsciiHistogram.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/BasicDescriptiveStatistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/BasicTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/BasicTableParser.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/CommandLineArguments.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/CommandProcessBuilder.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/DescriptiveStatistics.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/EasyWriter.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/ExternalProgram.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/FailedConditionCheckException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/ForesterConstants.PhylogeneticTreeFormats.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/ForesterConstants.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/ForesterUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/GeneralTable.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/IllegalFormatUseException.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/SequenceAccessionTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/StringInt.DescendingIntComparator.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/StringInt.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/SystemCommandExecutor.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/TaxonomyColors.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/TaxonomyUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/class-use/WindowsUtils.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/util/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/hmmer/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/hmmer/class-use/Test.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/hmmer/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/hmmer/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/hmmer/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/EbiDbEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/SequenceDatabaseEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/SequenceDbWsTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/UniProtEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/UniProtTaxonomy.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/class-use/EbiDbEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/class-use/SequenceDatabaseEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/class-use/SequenceDbWsTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/class-use/UniProtEntry.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/class-use/UniProtTaxonomy.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/seqdb/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/RestUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/TxSearch.RANKS.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/TxSearch.TAX_NAME_CLASS.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/TxSearch.TAX_RANK.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/TxSearch.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/WabiTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/RestUtil.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/TxSearch.RANKS.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/TxSearch.TAX_NAME_CLASS.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/TxSearch.TAX_RANK.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/TxSearch.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/class-use/WabiTools.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/forester/ws/wabi/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ColorBrewer.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/class-use/ColorBrewer.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/ColorPaletteChooserDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/ColorPanelSelectionModel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/DivergingColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/PaletteIcon.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/QualitativeColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/SequentialColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/ColorPaletteChooserDialog.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/ColorPanelSelectionModel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/DivergingColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/PaletteIcon.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/QualitativeColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/class-use/SequentialColorPalettePanel.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/package-summary.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/package-tree.html
/usr/share/doc/libbiojava6-java/apidocs/org/jcolorbrewer/ui/package-use.html
/usr/share/doc/libbiojava6-java/apidocs/overview-summary.html
/usr/share/doc/libbiojava6-java/apidocs/overview-tree.html
/usr/share/doc/libbiojava6-java/apidocs/package-search-index.js
/usr/share/doc/libbiojava6-java/apidocs/resources/glass.png
/usr/share/doc/libbiojava6-java/apidocs/resources/x.png
/usr/share/doc/libbiojava6-java/apidocs/script-dir/jquery-3.6.0.min.js
/usr/share/doc/libbiojava6-java/apidocs/script-dir/jquery-ui.min.css
/usr/share/doc/libbiojava6-java/apidocs/script-dir/jquery-ui.min.js
/usr/share/doc/libbiojava6-java/apidocs/script.js
/usr/share/doc/libbiojava6-java/apidocs/search.js
/usr/share/doc/libbiojava6-java/apidocs/serialized-form.html
/usr/share/doc/libbiojava6-java/apidocs/stylesheet.css
/usr/share/doc/libbiojava6-java/apidocs/tag-search-index.js
/usr/share/doc/libbiojava6-java/apidocs/type-search-index.js
/usr/share/lintian/overrides/libbiojava6-java-doc