[ 原始碼： assemblytics ]
套件：assemblytics（1.0+ds-1）
detect and analyze structural variants from a genome assembly
Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.
其他與 assemblytics 有關的套件
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-plyr
- tools for splitting, applying and combining data
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- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- rec: mummer
- Efficient sequence alignment of full genomes