[ 原始碼： seqtools ]
套件：belvu（4.44.1+dfsg-3）
belvu 的相關連結
Debian 的資源：
下載原始碼套件 seqtools：
- [seqtools_4.44.1+dfsg-3.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-3.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [www.sanger.ac.uk]
相似套件：
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments.
* Residues can be coloured by conservation, with user-configurable
cutoffs and colours.
* Residues can be coloured by residue type (user-configurable).
* Colour schemes can be imported or exported.
* Swissprot (or PIR) entries can be fetched by double clicking.
* The position in the alignment can be easily tracked.
* Manual deletion of rows and columns.
* Automatic editing of rows and columns based on customisable criteria:
- removal of all-gap columns;
- removal of all gaps;
- removal of redundant sequences;
- removal of a column by a user-specified percentage of gaps;
- filtering of sequences by percent identity;
- removal of sequences by a user-specified percentage of gaps;
- removal of partial sequences (those starting or ending with
gaps); and
- removal of columns by conservation (with user-specified
upper/lower cutoffs).
* The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
* Distance matrices between sequences can be generated using a variety
of distance metrics.
* Distance matrices can be imported or exported.
* Phylogenetic trees can be constructed based on various distance-based
tree reconstruction algorithms.
* Trees can be saved in New Hampshire format.
* Belvu can perform bootstrap phylogenetic reconstruction.
其他與 belvu 有關的套件
|
|
|
|
-
- dep: libatk1.0-0 (>= 1.12.4)
- ATK accessibility toolkit
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
-
- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
-
- dep: libcurl4 (>= 7.16.2)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
-
- dep: libfontconfig1 (>= 2.12.6)
- generic font configuration library - runtime
-
- dep: libfreetype6 (>= 2.2.1)
- FreeType 2 font engine, shared library files
-
- dep: libgbtools0
- library for visualising sequence alignments
-
- dep: libgcc1 (>= 1:3.0) [除 armhf]
- GCC 支援函式庫
- dep: libgcc1 (>= 1:3.5) [armhf]
-
- dep: libgdk-pixbuf2.0-0 (>= 2.22.0)
- GDK Pixbuf library
-
- dep: libglib2.0-0 (>= 2.22.0)
- GLib library of C routines
-
- dep: libgtk2.0-0 (>= 2.12.0)
- GTK+ graphical user interface library
-
- dep: libjsoncpp1 (>= 1.7.4)
- library for reading and writing JSON for C++
-
- dep: libpango-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libpangocairo-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libpangoft2-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3