套件:examl(3.0.22-1 以及其他的)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
其他與 examl 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
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- dep: libopenmpi3 (>= 4.1.0)
- high performance message passing library -- shared library
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- dep: openmpi-bin
- high performance message passing library -- binaries
下載 examl
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
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amd64 | 3.0.22-1+b4 | 905。5 kB | 5,858。0 kB | [檔案列表] |
arm64 | 3.0.22-1+b4 | 780。4 kB | 1,540。0 kB | [檔案列表] |
armel | 3.0.22-1+b4 | 797。5 kB | 1,873。0 kB | [檔案列表] |
armhf | 3.0.22-1+b4 | 786。2 kB | 1,513。0 kB | [檔案列表] |
i386 | 3.0.22-1+b4 | 1,084。5 kB | 7,220。0 kB | [檔案列表] |
mips64el | 3.0.22-1+b4 | 817。0 kB | 1,764。0 kB | [檔案列表] |
mipsel | 3.0.22-1+b4 | 830。1 kB | 1,822。0 kB | [檔案列表] |
ppc64el | 3.0.22-1+b4 | 833。7 kB | 1,792。0 kB | [檔案列表] |
s390x | 3.0.22-1+b4 | 816。0 kB | 2,004。0 kB | [檔案列表] |