[ 原始碼： stringtie ]
套件：stringtie（2.1.4+ds-4）
stringtie 的相關連結
Debian 的資源：
下載原始碼套件 stringtie：
- [stringtie_2.1.4+ds-4.dsc]
- [stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.1.4+ds.orig.tar.xz]
- [stringtie_2.1.4+ds-4.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [ccb.jhu.edu]
相似套件：
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
其他與 stringtie 有關的套件
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- dep: libc6 (>= 2.7)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC 支援函式庫
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: stringtie-examples
- 套件暫時不可用
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq