[ 原始碼： multiqc ]
套件：multiqc（1.9+dfsg-3）
multiqc 的相關連結
Debian 的資源：
下載原始碼套件 multiqc：
- [multiqc_1.9+dfsg-3.dsc]
- [multiqc_1.9+dfsg.orig-debian-tests-data.tar.xz]
- [multiqc_1.9+dfsg.orig.tar.xz]
- [multiqc_1.9+dfsg-3.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [multiqc.info]
相似套件：
output integration for RNA sequencing across tools and samples
The sequencing of DNA or RNA with current high-throughput technologies involves an array of tools and these are applied over a range of samples. It is easy to loose oversight. And gathering the data and forwarding them in a readable manner to the individuals who took the samples is a challenge for a tool in itself. Well. Here it is. MultiQC aggregates the output of multiple tools into a single report.
Reports are generated by scanning given directories for recognised log files. These are parsed and a single HTML report is generated summarising the statistics for all logs found. MultiQC reports can describe multiple analysis steps and large numbers of samples within a single plot, and multiple analysis tools making it ideal for routine fast quality control.
其他與 multiqc 有關的套件
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- dep: fonts-glyphicons-halflings
- icons made for smaller graphic
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- dep: libjs-bootstrap
- HTML, CSS and JS framework
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
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- dep: libjs-jquery-ui
- JavaScript UI library for dynamic web applications
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
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- dep: python3-distutils
- distutils package for Python 3.x
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- dep: python3-future
- Clean single-source support for Python 3 and 2 - Python 3.x
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- dep: python3-humanfriendly (>= 8.1-2)
- Python3 library to make user friendly text interfaces
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- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- dep: python3-lzstring
- LZ-based compression algorithm for Python (Python 3 version)
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- dep: python3-markdown
- text-to-HTML conversion library/tool (Python 3 version)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- dep: python3-simplejson
- simple, fast, extensible JSON encoder/decoder for Python 3.x
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- dep: python3-spectra
- Easy color scales and color conversion for Python (Python 3 version)
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: libjs-filesaver
- Client-side, HTML5 library for saving local files
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- rec: node-clipboard
- Node.js module to copy to clipboard without flash
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- rec: pandoc
- general markup converter
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- rec: texlive-xetex
- TeX Live: XeTeX and packages
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- enh: adapterremoval
- rapid adapter trimming, identification, and read merging of gene sequences
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- enh: afterqc
- 套件暫時不可用
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- enh: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- enh: bbmap
- short read aligner and other bioinformatic tools
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- enh: bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- enh: bcl2fastq
- 套件暫時不可用
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- enh: biobambam2
- tools for early stage alignment file processing
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- enh: biobloomtools
- 套件暫時不可用
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- enh: biscuit
- 套件暫時不可用
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- enh: bismark
- 套件暫時不可用
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- enh: bowtie
- Ultrafast memory-efficient short read aligner
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- enh: bowtie2
- ultrafast memory-efficient short read aligner
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- enh: busco
- benchmarking sets of universal single-copy orthologs
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- enh: clipandmerge
- 套件暫時不可用
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- enh: clusterflow
- 套件暫時不可用
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- enh: conpair
- 套件暫時不可用
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- enh: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- enh: damageprofiler
- 套件暫時不可用
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- enh: dedup
- 套件暫時不可用
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- enh: deeptools
- 套件暫時不可用
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- enh: disambiguate
- 套件暫時不可用
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- enh: dragen
- 套件暫時不可用
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- enh: fastp
- Ultra-fast all-in-one FASTQ preprocessor
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- enh: fastq-screen
- 套件暫時不可用
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- enh: fastqc
- quality control for high throughput sequence data
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- enh: featurecounts
- 套件暫時不可用
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- enh: fgbio
- 套件暫時不可用
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- enh: flash
- Fast Length Adjustment of SHort reads
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- enh: flexbar
- flexible barcode and adapter removal for sequencing platforms
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- enh: gatk
- 套件暫時不可用
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- enh: goleft-indexcov
- 套件暫時不可用
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- enh: happy
- Parser generator for Haskell
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- enh: hicexplorer
- 套件暫時不可用
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- enh: hicpro
- 套件暫時不可用
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- enh: hicup
- 套件暫時不可用
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- enh: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- enh: homer
- 套件暫時不可用
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- enh: htseq
- 套件暫時不可用
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- enh: interop
- 套件暫時不可用
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- enh: ivar
- functions broadly useful for viral amplicon-based sequencing
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- enh: jellyfish
- count k-mers in DNA sequences
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- enh: kaiju
- 套件暫時不可用
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- enh: kallisto
- near-optimal RNA-Seq quantification
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- enh: kat
- 套件暫時不可用
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- enh: kraken
- assigning taxonomic labels to short DNA sequences
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- enh: leehom
- 套件暫時不可用
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- enh: longranger
- 套件暫時不可用
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- enh: macs2
- 套件暫時不可用
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- enh: malt
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- enh: methylqa
- 套件暫時不可用
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- enh: minionqc
- 套件暫時不可用
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- enh: mirtop
- annotate miRNAs with a standard mirna/isomir naming
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- enh: mirtrace
- 套件暫時不可用
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- enh: mosdepth
- BAM/CRAM depth calculation biological sequencing
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- enh: mtnucratio
- 套件暫時不可用
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- enh: multivcfanalyzer
- 套件暫時不可用
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- enh: peddy
- 套件暫時不可用
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- enh: phantompeakqualtools
- 套件暫時不可用
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- enh: picard-tools
- Command line tools to manipulate SAM and BAM files
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- enh: preseq
- 套件暫時不可用
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- enh: prokka
- rapid annotation of prokaryotic genomes
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- enh: pycoqc
- computes metrics and generates Interactive QC plots
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- enh: qorts
- 套件暫時不可用
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- enh: qualimap
- 套件暫時不可用
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- enh: quast
- 套件暫時不可用
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- enh: rna-seqc
- 套件暫時不可用
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- enh: rna-star
- ultrafast universal RNA-seq aligner
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- enh: rockhopper
- 套件暫時不可用
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- enh: rsem
- RNA-Seq by Expectation-Maximization
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- enh: rseqc
- 套件暫時不可用
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- enh: salmon
- wicked-fast transcript quantification from RNA-seq data
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- enh: samblaster
- marks duplicates, extracts discordant/split reads
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- enh: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- enh: sargasso
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- enh: seqyclean
- 套件暫時不可用
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- enh: sexdeterrmine
- 套件暫時不可用
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- enh: sickle
- windowed adaptive trimming tool for FASTQ files using quality
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- enh: skewer
- post-processing of high-throughput DNA sequence reads
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- enh: slamdunk
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- enh: snpeff
- 套件暫時不可用
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- enh: snpsplit
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- enh: somalier
- 套件暫時不可用
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- enh: sortmerna
- tool for filtering, mapping and OTU-picking NGS reads
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- enh: stacks
- pipeline for building loci from short-read DNA sequences
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- enh: supernova
- 套件暫時不可用
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- enh: theta2
- 套件暫時不可用
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- enh: tophat
- 套件暫時不可用
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- enh: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- enh: varscan2
- 套件暫時不可用
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- enh: vcftools
- Collection of tools to work with VCF files
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- enh: verifybamid
- 套件暫時不可用