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[ 源代码: libfastahack  ]

软件包:libfastahack0(1.0.0+dfsg-11 以及其他的)

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下载源码包 libfastahack

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library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

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下载 libfastahack0

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
s390x 1.0.0+dfsg-11+b1 25.3 kB78.0 kB [文件列表]