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[ 源代码： python-sqt  ]

软件包：python3-sqt（0.8.0-8 以及其他的）

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SeQuencing Tools for biological DNA/RNA high-throughput data

sqt is a collection of command-line tools for working with high-throughput sequencing data. Conceptionally not fixed to use any particular language, many sqt subcommands are currently implemented in Python. For them, a Python package is available with functions for reading and writing FASTA/FASTQ files, computing alignments, quality trimming, etc.

The following tools are offered: 

 * sqt-coverage -- Compute per-reference statistics such as coverage
   and GC content
 * sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
   complement, quality trimming.
 * sqt-fastastats -- Compute N50, min/max length, GC content etc. of
   a FASTA file
 * sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
 * sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
 * sqt-chars -- Count length of the first word given on the command line.
 * sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
 * sqt-fastamutate -- Add substitutions and indels to sequences in a
   FASTA file.
 * sqt-fastaextract -- Efficiently extract one or more regions from an
   indexed FASTA file.
 * sqt-translate -- Replace characters in FASTA files (like the 'tr'
   command).
 * sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
   SAM file.
 * sqt-sam-insertsize -- Mean and standard deviation of paired-end
   insert sizes.
 * sqt-sam-set-op -- Set operations (union, intersection, ...) on
   SAM/BAM files.
 * sqt-bam-eof -- Check for the End-Of-File marker in compressed
   BAM files.
 * sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
   paired paired-end data.

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下载 python3-sqt

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
alpha （非官方移植版） 0.8.0-8 150.9 kB631.0 kB [文件列表]
amd64 0.8.0-8 162.3 kB583.0 kB [文件列表]
arm64 0.8.0-8 148.5 kB627.0 kB [文件列表]
armel 0.8.0-8 144.2 kB539.0 kB [文件列表]
armhf 0.8.0-8 146.7 kB447.0 kB [文件列表]
i386 0.8.0-8 163.5 kB591.0 kB [文件列表]
m68k （非官方移植版） 0.8.0-8 144.3 kB543.0 kB [文件列表]
mips64el 0.8.0-8 140.3 kB639.0 kB [文件列表]
ppc64el 0.8.0-8 162.6 kB755.0 kB [文件列表]
riscv64 0.8.0-8 164.5 kB523.0 kB [文件列表]
sh4 （非官方移植版） 0.8.0-8 174.6 kB615.0 kB [文件列表]
x32 （非官方移植版） 0.8.0-4 131.3 kB414.0 kB [文件列表]