全部搜索项
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码: transdecoder  ]

软件包:transdecoder-doc(5.0.1-2)

transdecoder-doc 的相关链接

Screenshot

Debian 的资源:

下载源码包 transdecoder

维护小组:

外部的资源:

相似软件包:

find coding regions within transcripts

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

TransDecoder identifies likely coding sequences based on the following criteria:

 * a minimum length open reading frame (ORF) is found in a transcript sequence
 * a log-likelihood score similar to what is computed by the GeneID software
   is > 0.
 * the above coding score is greatest when the ORF is scored in the 1st
   reading frame as compared to scores in the other 5 reading frames.
 * if a candidate ORF is found fully encapsulated by the coordinates of
   another candidate ORF, the longer one is reported. However, a single
   transcript can report multiple ORFs (allowing for operons, chimeras, etc).
 * optional the putative peptide has a match to a Pfam domain above the noise
   cutoff score.

This package contains the documentation and sample data.

其他与 transdecoder-doc 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 transdecoder-doc

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
all 12,022.3 kB24,953.0 kB [文件列表]