[ 源代码： parsnp ]
软件包：parsnp（1.5.4+dfsg-1）
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
其他与 parsnp 有关的软件包
|
|
|
|
-
- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
-
- dep: libc6 (>= 2.27)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
-
- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: phipack
- PHI test and other tests of recombination
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)