[ 源代码： r-cran-seurat ]
软件包：r-cran-seurat（4.3.0-1）
Tools for Single Cell Genomics
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
其他与 r-cran-seurat 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.32)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版
-
- dep: r-api-4.0
- 本虚包由这些包填实： r-base-core
-
- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
-
- dep: r-cran-cowplot
- GNU R streamlined plot theme and plot annotations for 'ggplot2'
-
- dep: r-cran-fitdistrplus
- support fit of parametric distribution
-
- dep: r-cran-future
- R package: A Future API for R
-
- dep: r-cran-future.apply
- apply function to elements in parallel using futures
-
- dep: r-cran-ggplot2 (>= 3.3.0)
- implementation of the Grammar of Graphics
-
- dep: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
-
- dep: r-cran-ggridges
- Ridgeline Plots in 'ggplot2'
-
- dep: r-cran-httr
- GNU R tools for working with URLs and HTTP
-
- dep: r-cran-ica
- Independent Component Analysis
-
- dep: r-cran-igraph
- GNU R network analysis and visualization
-
- dep: r-cran-irlba
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
-
- dep: r-cran-jsonlite
- Robust, High Performance JSON Parser and Generator for R
-
- dep: r-cran-kernsmooth
- GNU R package for kernel smoothing and density estimation
-
- dep: r-cran-leiden (>= 0.3.1)
- GNU R implementation of Leiden clustering algorithm
-
- dep: r-cran-lmtest
- GNU R package for diagnostic checking in linear models
-
- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
-
- dep: r-cran-matrix (>= 1.5-0)
- GNU R package of classes for dense and sparse matrices
-
- dep: r-cran-matrixstats
- GNU R methods that apply to rows and columns of a matrix
-
- dep: r-cran-miniui
- Shiny UI Widgets for Small Screens
-
- dep: r-cran-patchwork
- GNU R the composer of plots
-
- dep: r-cran-pbapply
- GNU R package providing progress bars for vectorized R functions
-
- dep: r-cran-plotly (>= 4.9.0)
- create interactive web graphics via 'plotly.js' in GNU R
-
- dep: r-cran-png
- GNU R package to read and write PNG images
-
- dep: r-cran-progressr
- GNU R inclusive, unifying API for progress updates
-
- dep: r-cran-rann
- Fast Nearest Neighbour Search Using L2 Metric
-
- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
-
- dep: r-cran-rcpp (>= 1.0.7)
- GNU R package for Seamless R and C++ Integration
-
- dep: r-cran-rcppannoy (>= 0.0.18)
- Rcpp bindings for Annoy (approximate nearest neighbors)
-
- dep: r-cran-rcppeigen
- GNU R package for Eigen templated linear algebra
-
- dep: r-cran-rcppprogress
- interruptible progress bar for C++ in GNU R packages
-
- dep: r-cran-reticulate
- R interface to Python modules, classes, and functions
-
- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
-
- dep: r-cran-rocr
- GNU R package to prepare and display ROC curves
-
- dep: r-cran-rtsne
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
-
- dep: r-cran-scales
- Scale functions for visualization
-
- dep: r-cran-scattermore (>= 0.7)
- GNU R scatterplots with more points
-
- dep: r-cran-sctransform (>= 0.3.5)
- Variance Stabilizing Transformations for Single Cell UMI Data
-
- dep: r-cran-seuratobject (>= 4.1.3)
- GNU R data structures for single cell data
-
- dep: r-cran-shiny
- GNU R web application framework
-
- dep: r-cran-spatstat.explore
- GNU R exploratory data analysis for the 'spatstat' family
-
- dep: r-cran-spatstat.geom
- GNU R geometrical functionality of the 'spatstat' package
-
- dep: r-cran-tibble
- GNU R Simple Data Frames
-
- dep: r-cran-uwot (>= 0.1.14)
- GNU R uniform manifold approximation and projection (UMAP)
-
- rec: r-cran-hdf5r
- GNU R interface to the 'HDF5' binary data format
-
- rec: r-cran-testthat
- GNU R testsuite
-
- sug: r-bioc-biobase
- base functions for Bioconductor
-
- sug: r-bioc-biocgenerics
- generic functions for Bioconductor
-
- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- sug: r-bioc-limma
- linear models for microarray data
-
- sug: r-bioc-monocle
- clustering, differential expression, and trajectory analysis for RNA-Seq
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
-
- sug: r-bioc-singlecellexperiment
- S4 Classes for Single Cell Data
-
- sug: r-bioc-summarizedexperiment
- BioConductor assay container
-
- sug: r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
-
- sug: r-cran-data.table
- GNU R extension of Data.frame
-
- sug: r-cran-ggrastr
- Bioconductor rasterize layers for 'ggplot2'
-
- sug: r-cran-metap
- Meta-Analysis of Significance Values
-
- sug: r-cran-mixtools
- GNU R tools for analyzing finite mixture models
-
- sug: r-cran-r.utils
- GNU R various programming utilities
-
- sug: r-cran-rsvd
- Randomized Singular Value Decomposition
-
- sug: r-cran-vgam
- GNU R package for estimating vector generalized additive models