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[ Source: bio-eagle  ]

Пакунок: bio-eagle (2.4.1-3 and others)

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Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Інші пакунки пов'язані з bio-eagle

  • depends
  • recommends
  • suggests
  • enhances

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Завантаження для всіх доступних архітектур
Архітектура Версія Розмір пакунка Розмір після встановлення Файли
amd64 2.4.1-3+b3 227.5 kB654.0 kB [список файлів]
i386 2.4.1-3+b3 253.1 kB697.0 kB [список файлів]