all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: ruby-crb-blast  ]

Пакунок: ruby-crb-blast (0.6.9-2)

Links for ruby-crb-blast

Screenshot

Debian Resources:

Download Source Package ruby-crb-blast:

Maintainers:

External Resources:

Similar packages:

Run conditional reciprocal best blast

CRB-BLAST is a novel method for finding orthologs between one set of sequences and another. This is particularly useful in genome and transcriptome annotation.

CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by performing BLAST alignments of query->target and target->query. Reciprocal best BLAST hits are those where the best match for any given query sequence in the query->target alignment is also the best hit of the match in the reverse (target->query) alignment.

Reciprocal best BLAST is a very conservative way to assign orthologs. The main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to each pairwise alignment by taking into account the overall relatedness of the two datasets being compared. This is done by fitting a function to the distribution of alignment e-values over sequence lengths. The function provides the e-value cutoff for a sequence of given length.

Інші пакунки пов'язані з ruby-crb-blast

  • depends
  • recommends
  • suggests
  • enhances

Завантажити ruby-crb-blast

Завантаження для всіх доступних архітектур
Архітектура Розмір пакунка Розмір після встановлення Файли
all 11.3 kB51.0 kB [список файлів]