[ Source: r-bioc-tcgabiolinks ]
Пакунок: r-bioc-tcgabiolinks (2.18.0+dfsg-1)
Links for r-bioc-tcgabiolinks
Debian Resources:
Download Source Package r-bioc-tcgabiolinks:
- [r-bioc-tcgabiolinks_2.18.0+dfsg-1.dsc]
- [r-bioc-tcgabiolinks_2.18.0+dfsg.orig.tar.xz]
- [r-bioc-tcgabiolinks_2.18.0+dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GNU R/Bioconductor package for integrative analysis with GDC data
The aim of TCGAbiolinks is:
1) facilitate the GDC open-access data retrieval, 2) prepare the data using the appropriate pre-processing strategies, 3) provide the means to carry out different standard analyses and 4) to easily reproduce earlier research results.In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Інші пакунки пов'язані з r-bioc-tcgabiolinks
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- dep: r-api-4.0
- virtual package provided by r-base-core
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- dep: r-api-bioc-3.12
- virtual package provided by r-bioc-biocgenerics
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- dep: r-base-core (>= 4.0.3-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.4.0)
- BioConductor assay container
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- dep: r-bioc-tcgabiolinksgui.data
- Data for the TCGAbiolinksGUI package
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- dep: r-cran-data.table
- GNU R extension of Data.frame
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- dep: r-cran-downloader (>= 0.4)
- GNU R package for downloading files over http and https
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- dep: r-cran-dplyr
- GNU R grammar of data manipulation
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-httr (>= 1.2.1)
- GNU R tools for working with URLs and HTTP
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- dep: r-cran-jsonlite (>= 1.0.0)
- Robust, High Performance JSON Parser and Generator for R
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- dep: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- dep: r-cran-plyr
- tools for splitting, applying and combining data
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- dep: r-cran-purrr
- GNU R functional programming tools
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- dep: r-cran-r.utils
- GNU R various programming utilities
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-rvest (>= 0.3.0)
- Easily Harvest (Scrape) Web Pages
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- dep: r-cran-stringr (>= 1.0.0)
- Make it easier to work with strings
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-tidyr
- GNU R package to easily tidy data
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- dep: r-cran-xml (>= 3.98.0)
- GNU R package for XML parsing and generation
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- dep: r-cran-xml2
- GNU R XML parser
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- rec: r-bioc-edaseq
- GNU R exploratory data analysis and normalization for RNA-Seq
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- rec: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- rec: r-cran-survminer
- GNU R drawing survival curves using 'ggplot2'
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- rec: r-cran-testthat
- GNU R testsuite
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- sug: r-bioc-affy
- BioConductor methods for Affymetrix Oligonucleotide Arrays
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-complexheatmap
- make complex heatmaps using GNU R
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- sug: r-bioc-consensusclusterplus
- GNU R determining cluster count and membership
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- sug: r-bioc-genefilter
- methods for filtering genes from microarray experiments
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- sug: r-bioc-limma
- linear models for microarray data
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- sug: r-bioc-sva
- GNU R Surrogate Variable Analysis
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- sug: r-cran-circlize
- Circular Visualization
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- sug: r-cran-devtools
- Tools to Make Developing R Packages Easier
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- sug: r-cran-doparallel
- GNU R foreach parallel adaptor for the parallel package
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- sug: r-cran-ggrepel (>= 0.6.3)
- auto-position non-overlapping text labels in plots
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- sug: r-cran-gridextra
- GNU R package with extensions for the grid package
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- sug: r-cran-igraph
- GNU R network analysis and visualization
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- sug: r-cran-jpeg
- Read and write JPEG images
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- sug: r-cran-parmigene
- Parallel Mutual Information to establish Gene Networks
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- sug: r-cran-png
- GNU R package to read and write PNG images
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-scales
- Scale functions for visualization
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- sug: r-cran-survival
- GNU R package for survival analysis
Завантажити r-bioc-tcgabiolinks
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| all | 5,494.3 kB | 5,890.0 kB | [список файлів] |