all options
bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: vcfanno  ]

Пакунок: vcfanno (0.3.2+ds-2 and others)

Links for vcfanno

Screenshot

Debian Resources:

Download Source Package vcfanno:

Maintainers:

External Resources:

Similar packages:

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Інші пакунки пов'язані з vcfanno

  • depends
  • recommends
  • suggests
  • enhances

Завантажити vcfanno

Завантаження для всіх доступних архітектур
Архітектура Версія Розмір пакунка Розмір після встановлення Файли
armel 0.3.2+ds-2+b6 1,821.7 kB5,766.0 kB [список файлів]