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/usr/share/doc/mindthegap-examples/README.test
/usr/share/doc/mindthegap-examples/changelog.Debian.gz
/usr/share/doc/mindthegap-examples/changelog.gz
/usr/share/doc/mindthegap-examples/copyright
/usr/share/doc/mindthegap-examples/run-unit-test
/usr/share/doc/mindthegap/examples/data/contig-reads.fasta.gz
/usr/share/doc/mindthegap/examples/data/contigs.fasta.gz
/usr/share/doc/mindthegap/examples/data/reads_r1.fastq.gz
/usr/share/doc/mindthegap/examples/data/reads_r2.fastq.gz
/usr/share/doc/mindthegap/examples/data/reference.fasta.gz
/usr/share/doc/mindthegap/examples/data/regions.bed
/usr/share/doc/mindthegap/examples/test/compare_vcf.sh
/usr/share/doc/mindthegap/examples/test/contig_test/README
/usr/share/doc/mindthegap/examples/test/contig_test/genome-variant.fasta.gz
/usr/share/doc/mindthegap/examples/test/contig_test/genome.fasta.gz
/usr/share/doc/mindthegap/examples/test/contig_test/gold.gfa.gz
/usr/share/doc/mindthegap/examples/test/contig_test/gold.info.txt
/usr/share/doc/mindthegap/examples/test/contig_test/gold.insertions.fasta.gz
/usr/share/doc/mindthegap/examples/test/contig_test/gold.log
/usr/share/doc/mindthegap/examples/test/contig_test/gold_seed_dictionary.fasta
/usr/share/doc/mindthegap/examples/test/eval.cpp.gz
/usr/share/doc/mindthegap/examples/test/full_test/README.gz
/usr/share/doc/mindthegap/examples/test/full_test/allele1.fasta.gz
/usr/share/doc/mindthegap/examples/test/full_test/allele2.fasta.gz
/usr/share/doc/mindthegap/examples/test/full_test/gold.bed
/usr/share/doc/mindthegap/examples/test/full_test/gold.breakpoints
/usr/share/doc/mindthegap/examples/test/full_test/gold.insertions.fasta
/usr/share/doc/mindthegap/examples/test/full_test/gold.insertions.vcf
/usr/share/doc/mindthegap/examples/test/full_test/gold.othervariants.vcf
/usr/share/doc/mindthegap/examples/test/full_test/gold_bed.breakpoints
/usr/share/doc/mindthegap/examples/test/full_test/gold_bed.info.txt
/usr/share/doc/mindthegap/examples/test/full_test/gold_bed.insertions.fasta
/usr/share/doc/mindthegap/examples/test/full_test/gold_bed.insertions.vcf
/usr/share/doc/mindthegap/examples/test/full_test/gold_bed.othervariants.vcf
/usr/share/doc/mindthegap/examples/test/full_test/gold_fill.output
/usr/share/doc/mindthegap/examples/test/full_test/gold_find.output
/usr/share/doc/mindthegap/examples/test/full_test/reference.fasta.gz
/usr/share/doc/mindthegap/examples/test/full_test/variants.txt
/usr/share/doc/mindthegap/examples/test/reads/beginfuzzySNP.fasta.gz
/usr/share/doc/mindthegap/examples/test/reads/deleted.fasta.gz
/usr/share/doc/mindthegap/examples/test/reads/deletionfuzzy.fasta.gz
/usr/share/doc/mindthegap/examples/test/reads/endfuzzySNP.fasta.gz
/usr/share/doc/mindthegap/examples/test/reads/master.fasta.gz
/usr/share/doc/mindthegap/examples/test/reads/readref10K.fasta.gz
/usr/share/doc/mindthegap/examples/test/references/beginfuzzySNP.fasta
/usr/share/doc/mindthegap/examples/test/references/deleted.fasta
/usr/share/doc/mindthegap/examples/test/references/deleted_before_SNP.fasta
/usr/share/doc/mindthegap/examples/test/references/deletionfuzzy.fasta
/usr/share/doc/mindthegap/examples/test/references/endfuzzySNP.fasta
/usr/share/doc/mindthegap/examples/test/references/g10K.fasta.gz
/usr/share/doc/mindthegap/examples/test/references/g10K_del.fasta.gz
/usr/share/doc/mindthegap/examples/test/references/master.fasta
/usr/share/doc/mindthegap/examples/test/references/multiSNP.fasta
/usr/share/doc/mindthegap/examples/test/references/n_after_gap.fasta
/usr/share/doc/mindthegap/examples/test/references/n_before_gap.fasta
/usr/share/doc/mindthegap/examples/test/references/n_in_stretch.fasta
/usr/share/doc/mindthegap/examples/test/references/sSNP.fasta
/usr/share/doc/mindthegap/examples/test/scripts/generate_read.py
/usr/share/doc/mindthegap/examples/test/scripts/make_deletions.py.gz
/usr/share/doc/mindthegap/examples/test/scripts/make_snp_deletions.py.gz
/usr/share/doc/mindthegap/examples/test/simple_full_test.sh.gz
/usr/share/doc/mindthegap/examples/test/simple_test.sh
/usr/share/doc/mindthegap/examples/test/truths/deletion.fasta
/usr/share/doc/mindthegap/examples/test/truths/deletionfuzzy.fasta
/usr/share/doc/mindthegap/examples/test/truths/insert_ref10K.fasta
/usr/share/doc/mindthegap/examples/test/truths/insertion.fasta
/usr/share/doc/mindthegap/examples/test/truths/insertion_before_SNP.fasta
/usr/share/doc/mindthegap/examples/test/truths/multiSNP.fasta
/usr/share/doc/mindthegap/examples/test/truths/multiSNP.vcf
/usr/share/doc/mindthegap/examples/test/truths/n_after_gap.fasta
/usr/share/doc/mindthegap/examples/test/truths/n_before_gap.fasta
/usr/share/doc/mindthegap/examples/test/truths/n_in_stretch.fasta
/usr/share/doc/mindthegap/examples/test/truths/sSNP.fasta
/usr/share/doc/mindthegap/examples/test/truths/truth_snp.vcf
/usr/share/doc/mindthegap/examples/test/vde.py.gz
/usr/share/doc/mindthegap/scripts/jenkins/README
/usr/share/doc/mindthegap/scripts/jenkins/tool-mindthegap-build-debian7-64bits-gcc-4.7.sh.gz
/usr/share/doc/mindthegap/scripts/jenkins/tool-mindthegap-build-macos-10.9.5-gcc-4.2.1.sh.gz
/usr/share/doc/mindthegap/scripts/jenkins/tool-mindthegap-release-debian.sh.gz
/usr/share/doc/mindthegap/scripts/python3/Context_genome_WG.py.gz
/usr/share/doc/mindthegap/scripts/python3/Inser_snp_in_ref.py
/usr/share/doc/mindthegap/scripts/python3/README.txt
/usr/share/doc/mindthegap/scripts/script_human_analysis/Context_genome_WG.py.gz
/usr/share/doc/mindthegap/scripts/script_human_analysis/Inser_snp_in_ref.py
/usr/share/doc/mindthegap/scripts/script_human_analysis/README.txt