Paket: multiqc (1.18+dfsg-1)

multiqc için bağlantılar

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Ana Sayfa [multiqc.info]

Benzer paketler:

output integration for RNA sequencing across tools and samples

The sequencing of DNA or RNA with current high-throughput technologies involves an array of tools and these are applied over a range of samples. It is easy to loose oversight. And gathering the data and forwarding them in a readable manner to the individuals who took the samples is a challenge for a tool in itself. Well. Here it is. MultiQC aggregates the output of multiple tools into a single report.

Reports are generated by scanning given directories for recognised log files. These are parsed and a single HTML report is generated summarising the statistics for all logs found. MultiQC reports can describe multiple analysis steps and large numbers of samples within a single plot, and multiple analysis tools making it ideal for routine fast quality control.

multiqc ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: fonts-glyphicons-halflings

icons made for smaller graphic
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dep: libjs-jquery

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dep: libjs-jquery-ui

JavaScript UI library for dynamic web applications
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-coloredlogs

colored terminal output for Python 3's logging module
dep: python3-distutils

distutils package for Python 3.x
dep: python3-humanfriendly

Python3 library to make user friendly text interfaces
dep: python3-humanize

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dep: python3-importlib-metadata

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dep: python3-jinja2

small but fast and easy to use stand-alone template engine
dep: python3-lzstring

LZ-based compression algorithm for Python (Python 3 version)
dep: python3-markdown

text-to-HTML conversion library/tool (Python 3 version)
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-networkx

tool to create, manipulate and study complex networks (Python3)
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-packaging

core utilities for python3 packages
dep: python3-pyaml-env

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dep: python3-requests

elegant and simple HTTP library for Python3, built for human beings
dep: python3-rich

render rich text, tables, progress bars, syntax highlighting, markdown and more
dep: python3-rich-click

creating beautiful command line interfaces for Python3
dep: python3-simplejson

simple, fast, extensible JSON encoder/decoder for Python 3.x
dep: python3-spectra

Easy color scales and color conversion for Python (Python 3 version)
dep: python3-yaml

YAML parser and emitter for Python3

rec: libjs-filesaver

Client-side, HTML5 library for saving local files
rec: node-clipboard

Node.js module to copy to clipboard without flash
rec: pandoc

general markup converter
rec: texlive-xetex

TeX Live: XeTeX and packages

enh: adapterremoval

rapid adapter trimming, identification, and read merging of gene sequences
enh: afterqc

Paket mevcut değil
enh: bamtools

toolkit for manipulating BAM (genome alignment) files
enh: bbmap

BBTools genomic aligner and other tools for short sequences
enh: bcftools

genomic variant calling and manipulation of VCF/BCF files
enh: bcl2fastq

Paket mevcut değil
enh: biobambam2

tools for early stage alignment file processing
enh: biobloomtools

Paket mevcut değil
enh: biscuit

Paket mevcut değil
enh: bismark

Paket mevcut değil
enh: bowtie

Ultrafast memory-efficient short read aligner
enh: bowtie2

ultrafast memory-efficient short read aligner
enh: busco

benchmarking sets of universal single-copy orthologs
enh: clipandmerge

Paket mevcut değil
enh: clusterflow

Paket mevcut değil
enh: conpair

Paket mevcut değil
enh: cutadapt

Clean biological sequences from high-throughput sequencing reads
enh: damageprofiler

Paket mevcut değil
enh: dedup

Paket mevcut değil
enh: deeptools

Paket mevcut değil
enh: disambiguate

Paket mevcut değil
enh: dragen

Paket mevcut değil
enh: fastp

Ultra-fast all-in-one FASTQ preprocessor
enh: fastq-screen

Paket mevcut değil
enh: fastqc

quality control for high throughput sequence data
enh: featurecounts

Paket mevcut değil
enh: fgbio

Paket mevcut değil
enh: flash

Fast Length Adjustment of SHort reads
enh: flexbar

flexible barcode and adapter removal for sequencing platforms
enh: gatk

Paket mevcut değil
enh: goleft-indexcov

Paket mevcut değil
enh: happy

Parser generator for Haskell
enh: hicexplorer

Paket mevcut değil
enh: hicpro

Paket mevcut değil
enh: hicup

Paket mevcut değil
enh: hisat2

graph-based alignment of short nucleotide reads to many genomes
enh: homer

Paket mevcut değil
enh: htseq

Paket mevcut değil
enh: interop

Paket mevcut değil
enh: ivar

functions broadly useful for viral amplicon-based sequencing
enh: jellyfish

count k-mers in DNA sequences
enh: kaiju

Paket mevcut değil
enh: kallisto

near-optimal RNA-Seq quantification
enh: kat

Paket mevcut değil
enh: kraken

assigning taxonomic labels to short DNA sequences
enh: leehom

Paket mevcut değil
enh: longranger

Paket mevcut değil
enh: macs2

Paket mevcut değil
enh: malt

sequence alignment and analysis tool to process sequencing data
enh: methylqa

Paket mevcut değil
enh: minionqc

Paket mevcut değil
enh: mirtop

annotate miRNAs with a standard mirna/isomir naming
enh: mirtrace

Paket mevcut değil
enh: mosdepth

BAM/CRAM depth calculation biological sequencing
enh: mtnucratio

Paket mevcut değil
enh: multivcfanalyzer

Paket mevcut değil
enh: peddy

Paket mevcut değil
enh: phantompeakqualtools

Paket mevcut değil
enh: picard-tools

Command line tools to manipulate SAM and BAM files
enh: preseq

Paket mevcut değil
enh: prokka

rapid annotation of prokaryotic genomes
enh: pycoqc

computes metrics and generates Interactive QC plots
enh: qorts

Paket mevcut değil
enh: qualimap

Paket mevcut değil
enh: quast

Paket mevcut değil
enh: rna-seqc

Paket mevcut değil
enh: rna-star

ultrafast universal RNA-seq aligner
enh: rockhopper

system for analyzing bacterial RNA-seq data
enh: rsem

RNA-Seq by Expectation-Maximization
enh: rseqc

Paket mevcut değil
enh: salmon

wicked-fast transcript quantification from RNA-seq data
enh: samblaster

marks duplicates, extracts discordant/split reads
enh: samtools

processing sequence alignments in SAM, BAM and CRAM formats
enh: sargasso

Paket mevcut değil
enh: seqyclean

Paket mevcut değil
enh: sexdeterrmine

Paket mevcut değil
enh: sickle

windowed adaptive trimming tool for FASTQ files using quality
enh: skewer

post-processing of high-throughput DNA sequence reads
enh: slamdunk

Paket mevcut değil
enh: snpeff

genetic variant annotation and effect prediction toolbox - tool
enh: snpsplit

Paket mevcut değil
enh: somalier

Paket mevcut değil
enh: sortmerna

tool for filtering, mapping and OTU-picking NGS reads
enh: stacks

pipeline for building loci from short-read DNA sequences
enh: supernova

Paket mevcut değil
enh: theta2

Paket mevcut değil
enh: trimmomatic

flexible read trimming tool for Illumina NGS data
enh: varscan2

Paket mevcut değil
enh: vcftools

Collection of tools to work with VCF files
enh: verifybamid

Paket mevcut değil

multiqc indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	695,9 kB	3.530,0 kB	[dosya listesi]