Paket: python3-pairtools (1.0.3-1)

python3-pairtools için bağlantılar

Debian Kaynakları:

pairtools Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [github.com]

Benzer paketler:

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

python3-pairtools ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.4)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.13)

dep: python3 (>= 3.11~)
dep: python3-bioframe

library to enable flexible, scalable operations on genomic interval dataframes
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-numpy (>= 1:1.22.0)

Fast array facility to the Python language (Python 3)
dep: python3-numpy-abi9

sanal paketi sağlayan python3-numpy
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pysam (>= 0.20.0+ds-3~)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-yaml

YAML parser and emitter for Python3

sug: python3-pairtools-examples (>= 1.0.2)

Process sequencing data from a Hi-C experiment (examples)

python3-pairtools indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
armel	199,0 kB	903,0 kB	[dosya listesi]