Paket: parsnp (1.5.4+dfsg-1)

parsnp için bağlantılar

Debian Kaynakları:

parsnp Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [harvest.readthedocs.org]

Benzer paketler:

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

parsnp ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: harvest-tools

archiving and postprocessing for reference-compressed genomic multi-alignments
dep: libc6 (>= 2.27)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libmuscle1 (>= 3.7+4565)

multiple alignment library for protein sequences
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: mummer

Efficient sequence alignment of full genomes
dep: phipack

PHI test and other tests of recombination
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-numpy

Fast array facility to the Python 3 language
dep: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees

rec: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)

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